Browse Element(s) Details


Os.8869.1.S1_at

Description gb:AK121633.1
DB_XREF= gi:37991256
TID=Os.8869.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050M07, full insert sequence.
FL= gb:AK121633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0652011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8869.1.S1_at--606--971Chr08:3685764..3685788 (25 bp)
AGGAGGAATTTGACATACCCTGCCA
LOC_Os08g06520
Os.8869.1.S1_at--620--931Chr08:3685767..3685791 (25 bp)
AGGAATTTGACATACCCTGCCAAGA
LOC_Os08g06520
Os.8869.1.S1_at--954--5211Chr08:3685769..3685793 (25 bp)
GAATTTGACATACCCTGCCAAGAAC
LOC_Os08g06520
Os.8869.1.S1_at--478--10251Chr08:3685772..3685796 (25 bp)
TTTGACATACCCTGCCAAGAACTAC
LOC_Os08g06520
Os.8869.1.S1_at--942--1431Chr08:3685789..3685898 (25 bp)
AGAACTACAAGTTGCTGCTGCCCTT
LOC_Os08g06520
Os.8869.1.S1_at--483--2431Chr08:3685927..3685951 (25 bp)
AAAAGCTGGATGTGCTGTCTTCAGA
LOC_Os08g06520
Os.8869.1.S1_at--94--1631Chr08:3685930..3685954 (25 bp)
AGCTGGATGTGCTGTCTTCAGACAA
LOC_Os08g06520
Os.8869.1.S1_at--784--7991Chr08:3685934..3685955 (22 bp)
GGATGTGCTGTCTTCAGACAAGACT
LOC_Os08g06520
Os.8869.1.S1_at--135--7311Chr08:3685938..3686192 (25 bp)
GTGCTGTCTTCAGACAAGACTAACA
LOC_Os08g06520
Os.8869.1.S1_at--98--5611Chr08:3686185..3686204 (20 bp)
GACAAGACTAACATTGAAGACACCA
LOC_Os08g06520
Os.8869.1.S1_at--529--5711Chr08:3686185..3686209 (25 bp)
GACTAACATTGAAGACACCAAGCAA
LOC_Os08g06520
Target Sequence 
AGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCCTTGAAAAGATAGATCAGTTTGTTGAAGAACNA
AAAGCTGGATGTGCTGTCTTCAGACAAGACTAACATTGAAGACACCAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis