Browse Element(s) Details


OsAffx.5723.2.S1_x_at

Description tigr:9636.m00585
TID=OsAffx.5723.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0650011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06480Os.15438.1.S1_at11/118+3660748..3669467expressed protein
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5723.2.S1_x_at--1013--91Chr08:3677284..3677308 (25 bp)
ATTCGACCCAAAAGCTTTATACTAG
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--560--2311Chr08:3677325..3677349 (25 bp)
AAAGGTTGGCTCCATCGATCAGGCA
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--629--5491Chr08:3677398..3677422 (25 bp)
GAACAGTTCAATTCCATTTTATCAG
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--952--7131Chr08:3677438..3677462 (25 bp)
GTCTTGTGGATAAAGCATCGGCTGT
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--890--7911Chr08:3677485..3677509 (25 bp)
GGTTGTCAGCCGAATGCTATCACAT
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--1019--3011Chr08:3677497..3677521 (25 bp)
AATGCTATCACATACCGCCACTTGA
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--254--4371Chr08:3677514..3677538 (25 bp)
CCACTTGACGTTAGGCTGCTTGAAA
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--913--4871Chr08:3677654..3677678 (25 bp)
GCTTTGCAGAAAATGGCGACTTGGT
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--963--3091Chr08:3677743..3677767 (25 bp)
AATACCCTTCTTAAAGCTCATGTAA
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--29--5871Chr08:3677782..3677806 (25 bp)
GAGCCAGATTTGTTAAGAGCGATGA
LOC_Os08g06500
OsAffx.5723.2.S1_x_at--473--8091Chr08:3677815..3677839 (25 bp)
GGAGCGATGCCAGATGCTGAAACAT
LOC_Os08g06500
Target Sequence 
ATTCGACCCAAAAGCTTTATACTAGCAATTGAAGCATTTGGAAAGGTTGGCTCCATCGATCAGGCAGAAGAGATATGGGG
AAAGTTTGAATCAACAAGAAAGCCGAAGCTGACAGAACAGTTCAATTCCATTTTATCAGTATATTGTAGGCATGGTCTTG
TGGATAAAGCATCGGCTGTGTTTAAAGAAATGAGAGCAAATGGTTGTCAGCCGAATGCTATCACATACCGCCACTTGACG
TTAGGCTGCTTGAAAGCAGGTATTGTTAAAGAAGCTCTGAAGACGATGGATATAGCAAAGAAAGAAGTTGTCACCAAGAA
GGTGAAAAGTTCAACACCATGGTTGGAGACAACTCATATGATACTTGAAAGCTTTGCAGAAAATGGCGACTTGGTAAATG
CAAAGAGAGTTTTTGACGAACTGAATGAATCAAAGTACTGTAGGAATTCATTTGTGTATAATACCCTTCTTAAAGCTCAT
GTAAAGGCAAAAGTTTATGAGCCAGATTTGTTAAGAGCGATGATTTTGAGAGGAGCGATGCCAGATGCTGAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5723.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis