Browse Element(s) Details


Os.15816.1.S1_a_at

Description gb:AK062252.1
DB_XREF= gi:32972270
TID=Os.15816.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G03, full insert sequence.
FL= gb:AK061518.1 gb:AK062252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3798411/11amino acid permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37940OsAffx.13225.1.S1_at11/113+21021183..21021653hypothetical protein
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g38040OsAffx.3429.1.S1_at11/113+21070565..21071086hypothetical protein
LOC_Os03g38050Os.50014.1.S1_at10/113+21072516..21078010Galactosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15816.1.S1_a_at--350--10131Chr03:21050896..21050920 (25 bp)
TATGATCCTGGAATTCATCGCCTTC
LOC_Os03g37984
Os.15816.1.S1_a_at--1074--4311Chr03:21051012..21051036 (25 bp)
CCATTCTGATCGTCGTGGTGATGAT
LOC_Os03g37984
Os.15816.1.S1_a_at--817--711Chr03:21051032..21051056 (25 bp)
ATGATGCTCGCGTCCTTCAAGGTGA
LOC_Os03g37984
Os.15816.1.S1_a_at--150--7551Chr03:21051130..21051154 (25 bp)
GTGGCTGAAGTTCTCCATAAGCGCA
LOC_Os03g37984
Os.15816.1.S1_a_at--376--2551Chr03:21051156..21051180 (25 bp)
AACTGCCAGATTTGCCGTACTCGAA
LOC_Os03g37984
Os.15816.1.S1_a_at--620--6191Chr03:21051185..21051209 (25 bp)
GAGGAAGACAGCACAATCCCACTTG
LOC_Os03g37984
Os.15816.1.S1_a_at--580--951Chr03:21051273..21051297 (25 bp)
AGGAACACTGCGATTTGCGACTTGT
LOC_Os03g37984
Os.15816.1.S1_a_at--238--10771Chr03:21051294..21051318 (25 bp)
TTGTTTCGTCTCACGGCTTTTCAAA
LOC_Os03g37984
Os.15816.1.S1_a_at--595--9971Chr03:21051385..21051409 (25 bp)
TACCATGTTGGCGTCAGGGAGGATT
LOC_Os03g37984
Os.15816.1.S1_a_at--433--2451Chr03:21051434..21051458 (25 bp)
AAAATACTTCACTTGGCTATTGCCA
LOC_Os03g37984
Os.15816.1.S1_a_at--468--9211Chr03:21051454..21051478 (25 bp)
TGCCAATAGCACCTGGTTATTCGTT
LOC_Os03g37984
Target Sequence 
TATGATCCTGGAATTCATCGCCTTCATCAAGCTGAGGGTGGTCCACCCAAACGCCTCCCGACCTTACAAGATCCCACTGG
GCACCATCGGCGCTGTCCTGATGATCATCCCACCTACCATTCTGATCGTCGTGGTGATGATGCTCGCGTCCTTCAAGGTG
ATGGTGGTCAGCATCATGGCAATGCTGGTTGGGTTCGTGCTGCAGCCGGCTCTGGTGTACGTGGAGAAGAGACGGTGGCT
GAAGTTCTCCATAAGCGCAGAACTGCCAGATTTGCCGTACTCGAACGTTGAGGAAGACAGCACAATCCCACTTGTGTGCN
NNNCTNNNNNNNNNNGCCANNNNAAGTAGAATCCCCAACCATAGCCATGCTAGACGGAAGGAACACTGCGATTTGCGACT
TGTTTCGTCTCACGGCTTTTCAAAGCCTCTTCATCTGCCATGTATAATTAGAAGAGAAGCAAGTTCANAANTNGTGATCA
TGCTATTTGTATACCATGTTGGCGTCAGGGAGGATTGTAAATCCCAGGGCCAGTTTGAGGAAAATACTTCACTTGGCTAT
TGCCAATAGCACCTGGTTATTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15816.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis