Browse Element(s) Details


Os.50014.1.S1_at

Description gb:AK119639.1
DB_XREF= gi:37989262
TID=Os.50014.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F06, full insert sequence.
FL= gb:AK119639.1 gb:AK121292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3805010/11Galactosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g38040OsAffx.3429.1.S1_at11/113+21070565..21071086hypothetical protein
LOC_Os03g38050Os.50014.1.S1_at10/113+21072516..21078010Galactosyltransferase family protein, expressed
LOC_Os03g38070NANA3+21086984..21089807retrotransposon protein, putative, unclassified
LOC_Os03g38076OsAffx.22722.1.S1_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38076OsAffx.22722.1.S1_x_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38082NANA3+21093587..21096368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38090NANA3+21099232..21099534hypothetical protein
LOC_Os03g38094OsAffx.9048.1.S1_at1/113+21100993..21103442hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50014.1.S1_at--515--1631Chr03:21073083..21073107 (25 bp)
AGCGGCATCTGCAAATCGGCGGATC
LOC_Os03g38050
Os.50014.1.S1_at--511--1851Chr03:21073025..21073049 (25 bp)
ACGACAGCGCCATCTGGAGTGCAAA
LOC_Os03g38050
Os.50014.1.S1_at--600--2191Chr03:21072969..21072993 (25 bp)
ACAACTTTGCACTCTTGAACACAAG
LOC_Os03g38050
Os.50014.1.S1_at--566--6471Chr03:21072920..21072944 (25 bp)
GATACAACTCGTGATTCAACAGTGT
LOC_Os03g38050
Os.50014.1.S1_at--352--7391Chr03:21072897..21072921 (25 bp)
GTGAGTAACCAATCATCTGAGCAGA
LOC_Os03g38050
Os.50014.1.S1_at--595--2011Chr03:21072799..21072823 (25 bp)
ACTCAAGTGTACAAGCATGGCCGAC
LOC_Os03g38050
Os.50014.1.S1_at--1000--5651Chr03:21072777..21072801 (25 bp)
GACAGGATGGGTTCTTCTGCTGCTT
LOC_Os03g38050
Os.50014.1.S1_at--279--10251Chr03:21072676..21072700 (25 bp)
TTTGTGGTCGAAAAGATCCCTGGAA
LOC_Os03g38050
Os.50014.1.S1_at--916--2331Chr03:21072567..21072591 (25 bp)
AAAGATGTTCATCACCGTTTCTGAT
LOC_Os03g38050
Os.50014.1.S1_at--243--1791Chr03:21072554..21072578 (25 bp)
ACCGTTTCTGATTAATTTTCTCTGG
LOC_Os03g38050
Os.50014.1.S1_at--1134--5391Chr03:21072516..21072540 (25 bp)
GAAGCTCATCTTCTCTTAGGTTGCT
NONE
Target Sequence 
AGCGGCATCTGCAAATCGGCGGATCGGATGAAGGAGGTCCATCAACGATGTGGGGAGAACGACAGCGCCATCTGGAGTGC
AAAGTTCTGAACTGAAGGAACATAATGCCCAACAACAACTTTGCACTCTTGAACACAAGCAGCACATATATATATAGATA
CAAGATACAACTCGTGATTCAACAGTGTGAGTAACCAATCATCTGAGCAGAGGAATCCCTGAAGATGATGAACGGAAAGA
ACAGTCGATTGATGGCAGTTTCAGAGATCATGGGATGAGTGTACACTCAAGTGTACAAGCATGGCCGACAGGATGGGTTC
TTCTGCTGCTTTTTTTTTCTTGTTTCTTTTTTTTTTCTTTTGGTGGTTTTCAGTAGGTATTGTATTGTTTTAGGGGATCT
TTTCTGTTTTGTGGTCGAAAAGATCCCTGGAAATTACCCATAAAGATGGAGAAGGTGAGGAGGGAAAGAGTGAAAGGAGA
GGGAGATCGAGAGGGGTCTCCCCCCACCATTCTTGGAAAGATGTTCATCACCGTTTCTGATTAATTTTCTCTGGAATAAC
ATAATAAGAAGCTCATCTTCTCTTAGGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis