Browse Element(s) Details


OsAffx.9048.1.S1_at

Description gb:NM_193206.1
DB_XREF= gi:34913495
GEN=OJ1619_F12.16
TID=OsAffx.9048.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1619_F12.16 (OJ1619_F12.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g380941/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38050Os.50014.1.S1_at10/113+21072516..21078010Galactosyltransferase family protein, expressed
LOC_Os03g38070NANA3+21086984..21089807retrotransposon protein, putative, unclassified
LOC_Os03g38076OsAffx.22722.1.S1_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38076OsAffx.22722.1.S1_x_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38082NANA3+21093587..21096368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38090NANA3+21099232..21099534hypothetical protein
LOC_Os03g38094OsAffx.9048.1.S1_at1/113+21100993..21103442hypothetical protein
LOC_Os03g38100NANA3+21109504..21111434Zinc knuckle family protein
LOC_Os03g38110NANA3+21112307..21113234hypothetical protein
LOC_Os03g38120Os.14492.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38120OsAffx.25407.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38130OsAffx.25408.1.S1_at11/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.7988.1.S1_s_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.18335.3.S1_x_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130OsAffx.12973.1.S1_at1/113+21127669..21130463hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9048.1.S1_at--1060--4231NONE
CCGTTGGCCCCTGATGCTTGTGGGA
NONE
OsAffx.9048.1.S1_at--383--9071Chr01:19616763..19616786 (24 bp)
TGCTTGTGGGAGATGTTCGCTCCGT
NONE
OsAffx.9048.1.S1_at--730--732Chr03:21103149..21103173 (25 bp)
ATGTTCGCTCCGTGAAGGCCGCAAG
LOC_Os03g38094
OsAffx.9048.1.S1_at--580--2951Chr01:19616737..19616761 (25 bp)
AAGGCCGCAAGGGAGATCGCATCTA
NONE
OsAffx.9048.1.S1_at--818--6031Chr01:19616725..19616749 (25 bp)
GAGATCGCATCTAGCTATCCCAATG
NONE
OsAffx.9048.1.S1_at--28--10151Chr01:19616710..19616734 (25 bp)
TATCCCAATGCTATCTGGAACGCGT
NONE
OsAffx.9048.1.S1_at--672--9451NONE
TCTGGAACGCGTGCTTGACAATTCA
NONE
OsAffx.9048.1.S1_at--585--5591Chr01:19615702..19615726 (25 bp)
GACAATTCATACCATGCACACGATG
NONE
OsAffx.9048.1.S1_at--932--651Chr01:19615689..19615713 (25 bp)
ATGCACACGATGACCCTGATCACGC
NONE
OsAffx.9048.1.S1_at--560--9191Chr01:19615656..19615680 (25 bp)
TGCCTACTCCTTGACACGCTAGGAG
NONE
OsAffx.9048.1.S1_at--659--10751Chr01:19615646..19615670 (25 bp)
TTGACACGCTAGGAGCACATGCCGA
NONE
Target Sequence 
CCGTTGGCCCCTGATGCTTGTGGGAGATGTTCGCTCCGTGAAGGCCGCAAGGGAGATCGCATCTAGCTATCCCAATGCTA
TCTGGAACGCGTGCTTGACAATTCATACCATGCACACGATGACCCTGATCACGCCTCCCTGCTGCCTACTCCTTGACACG
CTAGGAGCACATGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis