Browse Element(s) Details


Os.14492.1.S1_at

Description gb:AK120432.1
DB_XREF= gi:37990055
TID=Os.14492.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096L16, full insert sequence.
FL= gb:AK120432.1 gb:AK062224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3812010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38082NANA3+21093587..21096368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38090NANA3+21099232..21099534hypothetical protein
LOC_Os03g38094OsAffx.9048.1.S1_at1/113+21100993..21103442hypothetical protein
LOC_Os03g38100NANA3+21109504..21111434Zinc knuckle family protein
LOC_Os03g38110NANA3+21112307..21113234hypothetical protein
LOC_Os03g38120Os.14492.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38120OsAffx.25407.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38130OsAffx.25408.1.S1_at11/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.7988.1.S1_s_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.18335.3.S1_x_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130OsAffx.12973.1.S1_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38140OsAffx.3431.1.S1_at11/113+21132025..21133091hypothetical protein
LOC_Os03g38150OsAffx.25409.1.S1_at11/113+21134085..21134666hypothetical protein
LOC_Os03g38170OsAffx.13228.1.S1_at11/113+21145945..21153622expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14492.1.S1_at--267--5391Chr03:21119798..21119822 (25 bp)
GAAGCTGTAAACAAATTGCAACGGA
LOC_Os03g38120
Os.14492.1.S1_at--685--1911Chr03:21119778..21119802 (25 bp)
ACGGATAGACTTTTTCTATTTGGCA
LOC_Os03g38120
Os.14492.1.S1_at--451--9551Chr03:21119764..21119788 (25 bp)
TCTATTTGGCATTTTCTTCCGTACC
LOC_Os03g38120
Os.14492.1.S1_at--478--8471Chr03:21119758..21119782 (25 bp)
TGGCATTTTCTTCCGTACCTTTACA
LOC_Os03g38120
Os.14492.1.S1_at--742--10511Chr03:21119688..21119712 (25 bp)
TTCACCCCTAATATTCTCGTAATGC
LOC_Os03g38120
Os.14492.1.S1_at--64--10231Chr03:21119677..21119701 (25 bp)
TATTCTCGTAATGCAAGTGTTGGAC
LOC_Os03g38120
Os.14492.1.S1_at--811--1111Chr03:21119662..21119686 (25 bp)
AGTGTTGGACGTCTTATCAGTTTTC
LOC_Os03g38120
Os.14492.1.S1_at--350--411Chr03:21119647..21119671 (25 bp)
ATCAGTTTTCTTAGGCAGCGTGTTT
LOC_Os03g38120
Os.14492.1.S1_at--180--6511Chr03:21119613..21119638 (25 bp)
GATATGCACATAAGTCTACCCTTAA
LOC_Os03g38120
Os.14492.1.S1_at--1020--3711Chr03:21119598..21119622 (25 bp)
CTACCCTTAATGTGTGTTCTCGCTA
LOC_Os03g38120
Os.14492.1.S1_at--1050--8791Chr03:21119584..21119608 (25 bp)
TGTTCTCGCTATGCGTTTATGTGCC
NONE
Target Sequence 
GAAGCTGTAAACAAATTGCAACGGATAGACTTTTTCTATTTGGCATTTTCTTCCGTACCTTTACAACTTCACATATGTTT
TCAATACAGAACTGGTTGATTTGTTTAACCTTCACCCCTAATATTCTCGTAATGCAAGTGTTGGACGTCTTATCAGTTTT
CTTAGGCAGCGTGTTTTTTTCAATGATATGCACATAAGTCTACCCTTAATGTGTGTTCTCGCTATGCGTTTATGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis