Browse Element(s) Details


OsAffx.25409.1.S1_at

Description tigr:9631.m03660
TID=OsAffx.25409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3815011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38100NANA3+21109504..21111434Zinc knuckle family protein
LOC_Os03g38110NANA3+21112307..21113234hypothetical protein
LOC_Os03g38120Os.14492.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38120OsAffx.25407.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38130OsAffx.25408.1.S1_at11/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.7988.1.S1_s_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.18335.3.S1_x_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130OsAffx.12973.1.S1_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38140OsAffx.3431.1.S1_at11/113+21132025..21133091hypothetical protein
LOC_Os03g38150OsAffx.25409.1.S1_at11/113+21134085..21134666hypothetical protein
LOC_Os03g38170OsAffx.13228.1.S1_at11/113+21145945..21153622expressed protein
LOC_Os03g38190OsAffx.25410.1.S1_at10/113+21158714..21163393hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25409.1.S1_at--271--4572Chr10:12709191..12709215 (25 bp)
GCGCCGCCGGTCAAAGAAGCGAGAA
NONE
OsAffx.25409.1.S1_at--891--1352Chr10:12709251..12709275 (25 bp)
AGAGACGAGAGATCGTGGATTCCAC
NONE
OsAffx.25409.1.S1_at--1160--7891Chr03:21134360..21134537 (25 bp)
GGATTCCACGTCTGGATACGTGTCA
LOC_Os03g38150
OsAffx.25409.1.S1_at--783--9931Chr03:21134344..21134368 (25 bp)
TACGTGTCACGATACGATTAGTTGA
LOC_Os03g38150
OsAffx.25409.1.S1_at--750--1231Chr03:21134325..21134349 (25 bp)
AGTTGACGGAGTCCAAATCGCCCTG
LOC_Os03g38150
OsAffx.25409.1.S1_at--339--3912Chr10:12709479..12709503 (25 bp)
CTGGTTGCGGCAAAGCTAGGAGCTT
NONE
OsAffx.25409.1.S1_at--466--6091Chr03:21134254..21134278 (25 bp)
GAGTCATAGGAGCTTTCTGGTCGCA
LOC_Os03g38150
OsAffx.25409.1.S1_at--959--8871Chr03:21134176..21134200 (25 bp)
TGATGGCATGGGACACGGTGATTTC
LOC_Os03g38150
OsAffx.25409.1.S1_at--66--1931Chr03:21134162..21134186 (25 bp)
ACGGTGATTTCTGTGTCTCACGCTT
LOC_Os03g38150
OsAffx.25409.1.S1_at--30--7171Chr03:21134148..21134172 (25 bp)
GTCTCACGCTTTGCTCGATGAAGAG
LOC_Os03g38150
OsAffx.25409.1.S1_at--188--3931Chr03:21134115..21134139 (25 bp)
CGGCGGGAGCGATCTATGGCCTCCA
LOC_Os03g38150
Target Sequence 
GCGCCGCCGGTCAAAGAAGCGAGAAGCGAGATGGGGATTGGGATGCGACGTGGAGAGACGAGAGATCGTGGATTCCACGT
CTGGATACGTGTCACGATACGATTAGTTGACGGAGTCCAAATCGCCCTGGTTGCGGCAAAGCTAGGAGCTTTAAGATATC
TAGTATTTGAGAGGAGAGTCATAGGAGCTTTCTGGTCGCAGCCCACAGGGGAGACGCAAGCGAGCGCGACTGCAGGAAGG
CAAGGGCGGCCAGTGATGGCATGGGACACGGTGATTTCTGTGTCTCACGCTTTGCTCGATGAAGAGGACGGCGGCGGCGG
GAGCGATCTATGGCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis