Browse Element(s) Details


OsAffx.25410.1.S1_at

Description tigr:9631.m03662
TID=OsAffx.25410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3819010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38150OsAffx.25409.1.S1_at11/113+21134085..21134666hypothetical protein
LOC_Os03g38170OsAffx.13228.1.S1_at11/113+21145945..21153622expressed protein
LOC_Os03g38190OsAffx.25410.1.S1_at10/113+21158714..21163393hypothetical protein
LOC_Os03g38200OsAffx.3432.1.S1_at8/113+21165682..21166479hypothetical protein
LOC_Os03g38210OsAffx.14939.1.S1_at10/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38210Os.57514.1.S1_x_at1/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38230Os.21210.1.S1_at11/113+21178638..21180566membrane-associated zinc metalloprotease family protein, expressed
LOC_Os03g38240OsAffx.25411.1.S1_at10/113+21183326..21186831hypothetical protein
LOC_Os03g38240OsAffx.9705.1.S1_x_at1/113+21183326..21186831hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25410.1.S1_at--391--8151Chr03:21159794..21159818 (25 bp)
GGAAAGAAGGCAGCGCCCGCACCAG
LOC_Os03g38190
OsAffx.25410.1.S1_at--692--4111Chr03:21159811..21159834 (24 bp)
CGCACCAGCCACCAGGGAAGGAAGT
LOC_Os03g38190
OsAffx.25410.1.S1_at--237--5131Chr03:21160828..21160852 (25 bp)
GCACAACACAATAGCGTCTCGTACG
LOC_Os03g38190
OsAffx.25410.1.S1_at--575--4011NONE
CGTACGGTTGTAGTCCATCGTTTGT
NONE
OsAffx.25410.1.S1_at--765--6931Chr03:21161408..21161429 (22 bp)
GTAGTCCATCGTTTGTGGCAGCAGA
LOC_Os03g38190
OsAffx.25410.1.S1_at--189--5031Chr03:21161422..21161446 (25 bp)
GCAGCAGAAAACTGTTCGTTGACTA
LOC_Os03g38190
OsAffx.25410.1.S1_at--392--6771Chr03:21163164..21163188 (25 bp)
GTTATGACGGTTGTAGCCTATGCGA
LOC_Os03g38190
OsAffx.25410.1.S1_at--1153--2991Chr03:21163189..21163213 (25 bp)
AATGACCAATATGCCTGCAACCATC
LOC_Os03g38190
OsAffx.25410.1.S1_at--647--5871Chr03:21163220..21163244 (25 bp)
GAGCGATCAAGAGCGTCCAGGTGTA
LOC_Os03g38190
OsAffx.25410.1.S1_at--723--4651Chr03:21163232..21163256 (25 bp)
GCGTCCAGGTGTAAGGCCAGCCAGA
LOC_Os03g38190
OsAffx.25410.1.S1_at--489--9211Chr03:21163286..21163310 (25 bp)
TCCAAACTTCCCTATGTGGTTGACA
LOC_Os03g38190
Target Sequence 
GGAAAGAAGGCAGCGCCCGCACCAGCCACCAGGGAAGGAAGTCATAAGGTTGATTTGCACCAGCAAGATCAACAACCCAC
GGAGTGGTGTATCGATCGCTAAGGCACAACACAATAGCGTCTCGTACGGTTGTAGTCCATCGTTTGTGGCAGCAGAAAAC
TGTTCGTTGACTAAGGGTTGTTATGACGGTTGTAGCCTATGCGAAATGACCAATATGCCTGCAACCATCATTGGGGAGCG
ATCAAGAGCGTCCAGGTGTAAGGCCAGCCAGAGCCAGCGTCACCAGGGTTCGCAGCAGGCCTCCAAACTTCCCTATGTGG
TTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis