Browse Element(s) Details


OsAffx.9705.1.S1_x_at

Description gb:NM_189603.1
DB_XREF= gi:34906289
TID=OsAffx.9705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0894011/11hypothetical protein
LOC_Os03g382401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08890NANA1+4456152..4463843hypothetical protein
LOC_Os01g08900NANA1+4467272..4470227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08910Os.10703.2.S1_x_at1/111+4470545..4474530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08920Os.52238.1.S1_at4/111+4475856..4480184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08930Os.3774.1.S1_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08930Os.3774.2.S1_x_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08940OsAffx.9705.1.S1_x_at11/111+4487858..4488283hypothetical protein
LOC_Os01g08950Os.3777.2.A1_at11/111+4490167..4491947expressed protein
LOC_Os01g08960Os.3777.1.S1_s_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08960Os.3777.1.S1_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08970Os.7840.1.S1_at11/111+4494521..4501188Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os01g08980OsAffx.10931.2.S1_s_at9/111+4501422..4501862hypothetical protein
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9705.1.S1_x_at--553--1851Chr01:4488201..4488252 (25 bp)
ACGACGTCGTCCTCGACGCGAGCGG
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--96--4251Chr01:4488174..4488198 (25 bp)
CCGGTAGAGGCGACGACGGCGACGC
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--620--4691Chr01:4488148..4488172 (25 bp)
GCGGACAATGCGTTGATGAGGCTCC
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--712--2231Chr01:4488144..4488168 (25 bp)
ACAATGCGTTGATGAGGCTCCCGCG
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--677--4111Chr01:4488031..4488055 (25 bp)
CGCGGCGGCGGGATGGGTTACTATG
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--794--6151Chr01:4488020..4488044 (25 bp)
GATGGGTTACTATGTTGGCCTCGGC
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--293--811Chr01:4488019..4488043 (25 bp)
ATGGGTTACTATGTTGGCCTCGGCG
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--950--2031Chr01:4488012..4488036 (25 bp)
ACTATGTTGGCCTCGGCGGCGCGTT
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--61--7472Chr03:21183513..21183537 (25 bp)
GTGTGGGCCGCGATGTGGATGGCCG
LOC_Os03g38240
OsAffx.9705.1.S1_x_at--278--4651Chr01:4487925..4487949 (25 bp)
GCGTCGTCGGGAAGCGGCTCCTGTG
LOC_Os01g08940
OsAffx.9705.1.S1_x_at--858--7191Chr01:4487893..4487917 (25 bp)
GTCGTCCCTTTCCTGATCGTCGTCT
LOC_Os01g08940
Target Sequence 
ACGACGTCGTCCTCGACGCGAGCGGCGCCGGTAGAGGCGACGACGGCGACGCGGCGGACAATGCGTTGATGAGGCTCCCG
CGCGCTCTCGGCGCGGCCGGCGTCCTCACCGGCGCGATGGCCGCCGCGGCGGCCGTGTACGGGAGCCCCCCGGCCGGGAC
GGTCCTCGCCCGCGGCGGCGGGATGGGTTACTATGTTGGCCTCGGCGGCGCGTTCGCCGCCGGCGTGGCGGAGGTGTGGG
CCGCGATGTGGATGGCCGGGGATTGCCCGGGCCGCCGCGTCGTCGGGAAGCGGCTCCTGTGCGCCGCCGTCGTCCCTTTC
CTGATCGTCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9705.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis