Browse Element(s) Details


Os.19764.1.S2_at

Description gb:AK065125.1
DB_XREF= gi:32975143
TID=Os.19764.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P05, full insert sequence.
FL= gb:AK062984.1 gb:AK065125.1 gb:AK105222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0900011/11Glutaminyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08930Os.3774.1.S1_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08930Os.3774.2.S1_x_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08940OsAffx.9705.1.S1_x_at11/111+4487858..4488283hypothetical protein
LOC_Os01g08950Os.3777.2.A1_at11/111+4490167..4491947expressed protein
LOC_Os01g08960Os.3777.1.S1_s_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08960Os.3777.1.S1_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08970Os.7840.1.S1_at11/111+4494521..4501188Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os01g08980OsAffx.10931.2.S1_s_at9/111+4501422..4501862hypothetical protein
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006424biological_processglutamyl-tRNA aminoacylation
GO:0004818molecular_functionglutamate-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19764.1.S2_at--924--3391Chr01:4511869..4511893 (25 bp)
CAGCACCTGGAGTTGAACCACTTAA
LOC_Os01g09000
Os.19764.1.S2_at--16--10231Chr01:4511711..4511842 (25 bp)
TATTCCTCTCTGAGAATCCTGCTGA
LOC_Os01g09000
Os.19764.1.S2_at--887--8331Chr01:4511675..4511699 (25 bp)
GGCTGGGTGATCTTAACCCGAACTC
LOC_Os01g09000
Os.19764.1.S2_at--170--1051Chr01:4511645..4511669 (25 bp)
AGGTGATCAAGGGTGCCTACGCCGT
LOC_Os01g09000
Os.19764.1.S2_at--661--6691Chr01:4511591..4511611 (21 bp)
GTTCCAGTTCGAGCGGCTAGGCTAC
LOC_Os01g09000
Os.19764.1.S2_at--99--4871Chr01:4511484..4511505 (22 bp)
GCTAGGCTACTTCGCAGTGGACACA
LOC_Os01g09000
Os.19764.1.S2_at--287--7531Chr01:4511468..4511492 (25 bp)
GTGGACACAGACTCGACACCTGAGA
LOC_Os01g09000
Os.19764.1.S2_at--252--10831Chr01:4511440..4511464 (25 bp)
TTGTGTTCAACAGGACGGTTACCCT
LOC_Os01g09000
Os.19764.1.S2_at--446--3971Chr01:4511425..4511449 (25 bp)
CGGTTACCCTGCGTGATTCGTATGG
LOC_Os01g09000
Os.19764.1.S2_at--1075--8391Chr01:4511276..4511300 (25 bp)
GGCCCTTTCTTGTAAAATGGACTTG
LOC_Os01g09000
Os.19764.1.S2_at--412--7871Chr01:4511190..4511214 (25 bp)
GGTTTGGTGATTTGACTTCTAGCAT
LOC_Os01g09000
Target Sequence 
CAGCACCTGGAGTTGAACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGAATCCTGCTGAACTG
GAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAGAGGTGATCAAGGGTGCCTACGCCGTGCCATCGCTTGCGACTGC
GGTTCTTGGTGACAAGTTCCAGTTCGAGCGGCTAGGCTACTTCGCAGTGGACACAGACTCGACACCTGAGAACATTGTGT
TCAACAGGACGGTTACCCTGCGTGATTCGTATGGGAAAGCTGGGCCANAAGTGATTGCCAACTTACTGAATTTNCAGTAA
GTTTCTTTACCTGGGTGCNCTGAGGTTACACAGTGGGAAGAAAACNGCANTGTGATACATAACNATAGTGAAAAAAAAGG
GCCCTTTCTTGTAAAATGGACTTGTTTGACTTGTTATATGTTTCCATCAAATTGTGCATGATTGNGTATGTTCTCATGTC
AATGAGGTTTGGTGATTTGACTTCTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19764.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis