Browse Element(s) Details


Os.3777.1.S1_s_at

Description gb:AK073377.1
DB_XREF= gi:32983400
TID=Os.3777.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028G17, full insert sequence.
FL= gb:AK073377.1 gb:AK102544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0896011/11Phosducin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08900NANA1+4467272..4470227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08910Os.10703.2.S1_x_at1/111+4470545..4474530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08920Os.52238.1.S1_at4/111+4475856..4480184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08930Os.3774.1.S1_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08930Os.3774.2.S1_x_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08940OsAffx.9705.1.S1_x_at11/111+4487858..4488283hypothetical protein
LOC_Os01g08950Os.3777.2.A1_at11/111+4490167..4491947expressed protein
LOC_Os01g08960Os.3777.1.S1_s_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08960Os.3777.1.S1_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08970Os.7840.1.S1_at11/111+4494521..4501188Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os01g08980OsAffx.10931.2.S1_s_at9/111+4501422..4501862hypothetical protein
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3777.1.S1_s_at--929--5191Chr01:4492487..4492511 (25 bp)
GAATTGGCTACAAGATACCCAGCAA
LOC_Os01g08960
Os.3777.1.S1_s_at--371--2811Chr01:4492476..4492500 (25 bp)
AAGATACCCAGCAACTAAGTTTGTT
LOC_Os01g08960
Os.3777.1.S1_s_at--748--3071Chr01:4492449..4492473 (25 bp)
AATCATCTCTACAGACTGCATTCCC
LOC_Os01g08960
Os.3777.1.S1_s_at--732--2531Chr01:4492424..4492448 (25 bp)
AACTACCCAGATCGAAATGTCCCTA
LOC_Os01g08960
Os.3777.1.S1_s_at--1023--5571Chr01:4492411..4492435 (25 bp)
GAAATGTCCCTACTATACTTGTGTA
LOC_Os01g08960
Os.3777.1.S1_s_at--31--2071Chr01:4492395..4492419 (25 bp)
ACTTGTGTACAATAACAGTGCTGTT
LOC_Os01g08960
Os.3777.1.S1_s_at--570--2311Chr01:4492370..4492394 (25 bp)
AAAGGGACTTATGTCGGTCTGCAGA
LOC_Os01g08960
Os.3777.1.S1_s_at--919--2431Chr01:4491994..4492358 (25 bp)
AAAAGATGCACACCTGAGTCTGTTG
LOC_Os01g08960
Os.3777.1.S1_s_at--687--8891Chr01:4491811..4491830 (20 bp)
TGAGTCTGTTGCATTGGCCCTTTGC
LOC_Os01g08960
Os.3777.1.S1_s_at--266--10691Chr01:4491790..4491814 (25 bp)
TTGCCAGTCAGAGCCAGTCCTGAAT
LOC_Os01g08960
Os.3777.1.S1_s_at--767--4671Chr01:4491752..4491776 (25 bp)
GCGGTGATTCATCCCGGGACAATGT
LOC_Os01g08960
Target Sequence 
GAATTGGCTACAAGATACCCAGCAACTAAGTTTGTTAAAATCATCTCTACAGACTGCATTCCCAACTACCCAGATCGAAA
TGTCCCTACTATACTTGTGTACAATAACAGTGCTGTTAAAGGGACTTATGTCGGTCTGCAGAAGTTTGGTGGAAAAAGAT
GCACACCTGAGTCTGTTGCATTGGCCCTTTGCCAGTCAGAGCCAGTCCTGAATGATGGGCAGAGCGGCGGTGATTCATCC
CGGGACAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3777.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis