Browse Element(s) Details


OsAffx.9704.1.S1_at

Description tigr:9629.m00842
TID=OsAffx.9704.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0899011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08930Os.3774.1.S1_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08930Os.3774.2.S1_x_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08940OsAffx.9705.1.S1_x_at11/111+4487858..4488283hypothetical protein
LOC_Os01g08950Os.3777.2.A1_at11/111+4490167..4491947expressed protein
LOC_Os01g08960Os.3777.1.S1_s_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08960Os.3777.1.S1_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08970Os.7840.1.S1_at11/111+4494521..4501188Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os01g08980OsAffx.10931.2.S1_s_at9/111+4501422..4501862hypothetical protein
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9704.1.S1_at--66--8971Chr01:4507555..4507579 (25 bp)
TGACAACGTTGATAGCACCTGCTGC
LOC_Os01g08990
OsAffx.9704.1.S1_at--410--8931Chr01:4507594..4507618 (25 bp)
TGACCTATGGTTACATGCGCTGGAA
LOC_Os01g08990
OsAffx.9704.1.S1_at--935--9071Chr01:4508090..4508114 (25 bp)
TGCTAGTCTGATGTATGTCACCAAG
LOC_Os01g08990
OsAffx.9704.1.S1_at--406--10231Chr01:4508153..4508177 (25 bp)
TTTGGAACAAGTGCAGAGCTCTCTT
LOC_Os01g08990
OsAffx.9704.1.S1_at--366--9831Chr01:4508332..4508356 (25 bp)
TAAAAGGCACTTAACCCAGCGCATT
LOC_Os01g08990
OsAffx.9704.1.S1_at--540--7771Chr01:4508567..4508591 (25 bp)
GGTGCACGATTGAAACTCCAGGATA
LOC_Os01g08990
OsAffx.9704.1.S1_at--904--1431Chr01:4509344..4509368 (25 bp)
AGAACTATTCATTGGCCGGTGTGAT
LOC_Os01g08990
OsAffx.9704.1.S1_at--724--7731Chr01:4509361..4509385 (25 bp)
GGTGTGATGTACCTCGTCGAATTCA
LOC_Os01g08990
OsAffx.9704.1.S1_at--988--6151Chr01:4509402..4509591 (25 bp)
GAGGTTGCCTCGTAGCGTGGAACAC
LOC_Os01g08990
OsAffx.9704.1.S1_at--1112--2431Chr01:4509587..4509611 (25 bp)
AACACTTGCAACGAACTGCCAGGCT
LOC_Os01g08990
OsAffx.9704.1.S1_at--717--4051Chr01:4509831..4509855 (25 bp)
CGAGTCGGCGACTCCTGTAGGAAGT
LOC_Os01g08990
Target Sequence 
TGACAACGTTGATAGCACCTGCTGCAGCTGCTGGGGCGTTGACCTATGGTTACATGCGCTGGAAAGGCATATCTATTGCT
AGTCTGATGTATGTCACCAAGCAAAATATGGCTAATGCTGTTGCAAGCATGACCAAGCATTTGGAACAAGTGCAGAGCTC
TCTTGCAGCTGCTAAAAGGCACTTAACCCAGCGCATTCAACATTTGGATGATAAGTTGGATCAGCAGAAACAGATTTCCG
GGCAAATAAAAGAGGAGGTTACTGGTGCACGATTGAAACTCCAGGATATTGGTTCCGAAATGCAAAAGATCAAACAAGTG
GCTCATGGCCTGGGTGGAAAGTTGGATTCAATTGAAGCAAAACAGAACTATTCATTGGCCGGTGTGATGTACCTCGTCGA
ATTCATAGAGCAAAACGGTGGGAGGTTGCCTCGTAGCGTGGAACACTTGCAACGAACTGCCAGGCTCTCTGGAATTACTG
GAGACCAAAAGCAGCTGCAGGGGCTCGGTCAGTTGCTGGCGATCGAGTCGGCGACTCCTGTAGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis