Browse Element(s) Details


Os.46606.1.S1_x_at

Description gb:NM_189611.1
DB_XREF= gi:34906305
TID=Os.46606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0902010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46606.1.S1_x_at--432--6711Chr01:4534354..4534378 (25 bp)
GTTCGCCTCTGGTCTATGAGTACAA
LOC_Os01g09020
Os.46606.1.S1_x_at--37--2351Chr01:4534423..4534447 (25 bp)
AAAGCACTGTCACTTCTATCTGTTG
LOC_Os01g09020
Os.46606.1.S1_x_at--1029--3691NONE
CTATCTGTTGCCAGGGCTCTTCTGT
NONE
Os.46606.1.S1_x_at--821--7571Chr01:4535563..4535587 (25 bp)
GGGCTCTTCTGTGGGACATACGCAA
LOC_Os01g09020
Os.46606.1.S1_x_at--8--9591Chr01:4535631..4535655 (25 bp)
TCAGACGAACCCGTGACATTTCTTC
LOC_Os01g09020
Os.46606.1.S1_x_at--524--7811Chr01:4535697..4535721 (25 bp)
GGTCAGGTCCATGTCTGGGAAACAC
LOC_Os01g09020
Os.46606.1.S1_x_at--52--2051Chr01:4535731..4535755 (25 bp)
ACTTTGCGAACACACTGAGCTGCGG
LOC_Os01g09020
Os.46606.1.S1_x_at--977--8911Chr01:4535746..4535770 (25 bp)
TGAGCTGCGGTGAGCCTGCTAAATC
LOC_Os01g09020
Os.46606.1.S1_x_at--304--5391Chr01:4535779..4535803 (25 bp)
GAAGCACACTATCAGCCATGGCTGT
LOC_Os01g09020
Os.46606.1.S1_x_at--970--7211Chr01:4535844..4535868 (25 bp)
GTCGACATGGTTCACTACCGAGACT
LOC_Os01g09020
Os.46606.1.S1_x_at--734--3511Chr01:4535873..4535897 (25 bp)
CATGTCATCTGTCCCTGTATCTTTA
LOC_Os01g09020
Target Sequence 
GTTCGCCTCTGGTCTATGAGTACAAGAGGCAAAAATCACCCTCTAATATCAACATTTCATGGCCATGAAAAAGCACTGTC
ACTTCTATCTGTTGCCAGGGCTCTTCTGTGGGACATACGCAAGTCTCAAGAACTCCCAAATATAGTGGCAGAATTGCAAT
CAGAATCAGACGAACCCGTGACATTTCTTCACTTGGATCCATACAAGGTGATAACTGGAGCACCATCAGATGGTCAGGTC
CATGTCTGGGAAACACAGACGGGCCACTTTGCGAACACACTGAGCTGCGGTGAGCCTGCTAAATCGGCAGACAGAAGCAC
ACTATCAGCCATGGCTGTGGACGGGTGTAGGATCGCCATGGCGGGGAGCTCCGCCGAAGTCGACATGGTTCACTACCGAG
ACTTTCTCATGTCATCTGTCCCTGTATCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46606.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis