Browse Element(s) Details


OsAffx.21907.1.S1_at

Description gb:NM_189613.1
DB_XREF= gi:34906309
TID=OsAffx.21907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g090691/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09090OsAffx.1963.1.S1_at11/111+4568493..4569020hypothetical protein
LOC_Os01g09100Os.29979.1.S1_at11/111+4569367..4570211WRKY DNA binding domain containing protein, expressed
LOC_Os01g09110NANA1+4572514..4572957hypothetical protein
LOC_Os01g09120Os.26449.1.S1_at11/111+4578009..4581492PAS domain S-box family protein, expressed
LOC_Os01g09130OsAffx.1964.2.S1_s_at11/111+4583888..4584637hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21907.1.S1_at--761--6351Chr01:4560579..4560603 (25 bp)
GATGCCGTTATTTCAGCCAAGGATG
LOC_Os01g09069
OsAffx.21907.1.S1_at--859--6491Chr01:4562307..4562331 (25 bp)
GATAGAGTATATTTTGCCAGGTCAC
NONE
OsAffx.21907.1.S1_at--356--171Chr01:4562317..4562341 (25 bp)
ATTTTGCCAGGTCACATCGAGATCG
NONE
OsAffx.21907.1.S1_at--399--7831Chr01:4562326..4562350 (25 bp)
GGTCACATCGAGATCGGAGTCAAAT
NONE
OsAffx.21907.1.S1_at--828--6091Chr01:4562342..4562366 (25 bp)
GAGTCAAATCCTCCGGCCACATCGA
NONE
OsAffx.21907.1.S1_at--983--6371Chr01:4562365..4562389 (25 bp)
GATCGATTAACGACCTTAATTCCGA
NONE
OsAffx.21907.1.S1_at--571--1831Chr01:4562374..4562398 (25 bp)
ACGACCTTAATTCCGATCGATCAAG
NONE
OsAffx.21907.1.S1_at--42--9751Chr01:4562381..4562405 (25 bp)
TAATTCCGATCGATCAAGCTAAGAT
NONE
OsAffx.21907.1.S1_at--941--1571Chr01:4562397..4562421 (25 bp)
AGCTAAGATCGATCGTTGTCTCTGT
NONE
OsAffx.21907.1.S1_at--309--2811Chr01:4562401..4562425 (25 bp)
AAGATCGATCGTTGTCTCTGTTTGC
NONE
OsAffx.21907.1.S1_at--733--9391Chr01:4562409..4562433 (25 bp)
TCGTTGTCTCTGTTTGCGGTGGCCA
NONE
Target Sequence 
GATGCCGTTATTTCAGCCAAGGATGAAACAGAAGTATTCAAGATAGAGTATATTTTGCCAGGTCACATCGAGATCGGAGT
CAAATCCTCCGGCCACATCGATCGATTAACGACCTTAATTCCGATCGATCAAGCTAAGATCGATCGTTGTCTCTGTTTGC
GGTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis