Browse Element(s) Details


Os.3783.1.S1_x_at

Description gb:NM_189614.1
DB_XREF= gi:34906311
TID=Os.3783.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0908010/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09090OsAffx.1963.1.S1_at11/111+4568493..4569020hypothetical protein
LOC_Os01g09100Os.29979.1.S1_at11/111+4569367..4570211WRKY DNA binding domain containing protein, expressed
LOC_Os01g09110NANA1+4572514..4572957hypothetical protein
LOC_Os01g09120Os.26449.1.S1_at11/111+4578009..4581492PAS domain S-box family protein, expressed
LOC_Os01g09130OsAffx.1964.2.S1_s_at11/111+4583888..4584637hypothetical protein
LOC_Os01g09140OsAffx.1965.1.S1_at11/111+4587722..4588174hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3783.1.S1_x_at--892--2191Chr01:4564019..4564043 (25 bp)
ACAAAGCGTCCAGGAGCTCGAGCGG
LOC_Os01g09080
Os.3783.1.S1_x_at--827--4371Chr01:4564087..4564111 (25 bp)
GCCAAGAAGGCTAGGGTTTCCGTCA
LOC_Os01g09080
Os.3783.1.S1_x_at--529--10071Chr01:4564098..4564122 (25 bp)
TAGGGTTTCCGTCAGAGTCAAGTGC
LOC_Os01g09080
Os.3783.1.S1_x_at--104--4431Chr01:4564306..4564330 (25 bp)
GCCTATTACCGTTGCACCGTTGCAC
LOC_Os01g09080
Os.3783.1.S1_x_at--187--9951Chr01:4564343..4564367 (25 bp)
TACGCAAGCAGGTACGTATATACGC
LOC_Os01g09080
Os.3783.1.S1_x_at--1062--251Chr01:4564400..4564424 (25 bp)
ATATGATTCGAATGATGCGTACTTA
LOC_Os01g09080
Os.3783.1.S1_x_at--154--10831Chr01:4564446..4564470 (25 bp)
TTGTGTTGGTTTTGTGTTAATCGAT
LOC_Os01g09080
Os.3783.1.S1_x_at--431--8791Chr01:4564460..4564484 (25 bp)
TGTTAATCGATGGATCAGGTGCAGA
LOC_Os01g09080
Os.3783.1.S1_x_at--664--1351Chr01:4564482..4564506 (25 bp)
AGAGATGCGCGGACGACATGTCGAT
LOC_Os01g09080
Os.3783.1.S1_x_at--465--5791Chr01:4564493..4564517 (25 bp)
GACGACATGTCGATCCTGATCACGA
LOC_Os01g09080
Os.3783.1.S1_x_at--165--6351NONE
GATGCTGACGTCTTGGCTCGACCAA
NONE
Target Sequence 
ACAAAGCGTCCAGGAGCTCGAGCGGCGGCGGCGATGGCGCCGACGACGAGGTGCTGCAGCAGCAGCAGGCCAAGAAGGCT
AGGGTTTCCGTCAGAGTCAAGTGCNANNNNNNNNNGATGAACGATGGGTGTCAGTGGCGGAAATACGGGCAGAAAATCTC
AAAGGGGAACCCTTGCCCGCGCGCCTATTACCGTTGCACCGTTGCACCCAACTGCCCTGTACGCAAGCAGGTACGTATAT
ACGCGTATAAATACGTATTTACGTTTACAAATACGTATATGATTCGAATGATGCGTACTTAAATTGAAGCGNAAATTTAA
ATTTGTGTTGGTTTTGTGTTAATCGATGGATCAGGTGCAGAGATGCGCGGACGACATGTCGATCCTGATCACGACGTACG
AGGGCACGCACAGCCACCCGCTGCCGCCGGCGGGGGGGCGGAATGGCGTNCACAACGTCGGCCGCGGCGGCGATGCTGAC
GTCTTGGCTCGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3783.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis