Browse Element(s) Details


OsAffx.10978.1.S1_at

Description tigr:9629.m00851
TID=OsAffx.10978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0908011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09090OsAffx.1963.1.S1_at11/111+4568493..4569020hypothetical protein
LOC_Os01g09100Os.29979.1.S1_at11/111+4569367..4570211WRKY DNA binding domain containing protein, expressed
LOC_Os01g09110NANA1+4572514..4572957hypothetical protein
LOC_Os01g09120Os.26449.1.S1_at11/111+4578009..4581492PAS domain S-box family protein, expressed
LOC_Os01g09130OsAffx.1964.2.S1_s_at11/111+4583888..4584637hypothetical protein
LOC_Os01g09140OsAffx.1965.1.S1_at11/111+4587722..4588174hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10978.1.S1_at--763--4031Chr01:4564926..4564950 (25 bp)
CGTTCGGCCATCATTTCGGCATGAT
LOC_Os01g09080
OsAffx.10978.1.S1_at--1051--411Chr01:4564935..4564959 (25 bp)
ATCATTTCGGCATGATGGGCATGGC
LOC_Os01g09080
OsAffx.10978.1.S1_at--1017--1891Chr01:4565009..4565033 (25 bp)
ACGTCGCCGTACCTGCAGAGAGCCA
LOC_Os01g09080
OsAffx.10978.1.S1_at--202--3931Chr01:4565058..4565082 (25 bp)
CGGCCGTGACGGACACGATCGCGAA
LOC_Os01g09080
OsAffx.10978.1.S1_at--709--8091Chr01:4565095..4565119 (25 bp)
GGACCCGAGCTTCCAGTCGGTTTTG
LOC_Os01g09080
OsAffx.10978.1.S1_at--83--4711Chr01:4565162..4565186 (25 bp)
GCGGCGCCGAACAAGTGAAGCAAGT
LOC_Os01g09080
OsAffx.10978.1.S1_at--292--3091Chr01:4565232..4565256 (25 bp)
AATAATTGCTTGATTTGTTCTGCTA
LOC_Os01g09080
OsAffx.10978.1.S1_at--70--6531Chr01:4565243..4565267 (25 bp)
GATTTGTTCTGCTATACGTACGTAT
LOC_Os01g09080
OsAffx.10978.1.S1_at--441--6991Chr01:4565260..4565284 (25 bp)
GTACGTATTAGTCTCCTAATTGGCA
LOC_Os01g09080
OsAffx.10978.1.S1_at--671--4991Chr01:4565316..4565340 (25 bp)
GCATGCACAAGCGTGAGATCACTCA
LOC_Os01g09080
OsAffx.10978.1.S1_at--1147--6031Chr01:4565330..4565354 (25 bp)
GAGATCACTCAATTGTATATGCACT
LOC_Os01g09080
Target Sequence 
CGTTCGGCCATCATTTCGGCATGATGGGCATGGCGGCGGCGGCGGCGAGGCCGGCGCCGGAGCAGCTGTTCGGCGGCCAG
ACGACGTCGCCGTACCTGCAGAGAGCCATCGGCGGCGGCGGCGTCGCGCCGGCGGCCGTGACGGACACGATCGCGAAGGC
GATCACGTCGGACCCGAGCTTCCAGTCGGTTTTGGCGGCGGCGATCACGTCCTACATGGGGCGCGGCGGCGGCGCGGCGG
CGCCGAACAAGTGAAGCAAGTTCATAAAATTGATCTAAATTTTGTTTAGATAATCAATTAGATGGTAATAATTGCTTGAT
TTGTTCTGCTATACGTACGTATTAGTCTCCTAATTGGCAAATTGATGTACATAGAGTACAGTATATATAAGCATGCACAA
GCGTGAGATCACTCAATTGTATATGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis