Browse Element(s) Details


Os.26449.1.S1_at

Description gb:AK109372.2
DB_XREF= gi:42821688
TID=Os.26449.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.26449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A01, full insert sequence.
FL= gb:AK111679.1 gb:AK109372.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0912011/11PAS domain S-box family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09090OsAffx.1963.1.S1_at11/111+4568493..4569020hypothetical protein
LOC_Os01g09100Os.29979.1.S1_at11/111+4569367..4570211WRKY DNA binding domain containing protein, expressed
LOC_Os01g09110NANA1+4572514..4572957hypothetical protein
LOC_Os01g09120Os.26449.1.S1_at11/111+4578009..4581492PAS domain S-box family protein, expressed
LOC_Os01g09130OsAffx.1964.2.S1_s_at11/111+4583888..4584637hypothetical protein
LOC_Os01g09140OsAffx.1965.1.S1_at11/111+4587722..4588174hypothetical protein
LOC_Os01g09150OsAffx.10980.1.S1_at11/111+4592862..4593614hypothetical protein
LOC_Os01g09160NANA1+4596579..4599829transposon protein, putative, unclassified
LOC_Os01g09170NANA1+4600649..4606804transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007165biological_processsignal transduction
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0009903biological_processchloroplast avoidance movement
GO:0009904biological_processchloroplast accumulation movement
GO:0010119biological_processregulation of stomatal movement
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005737cellular_componentcytoplasm
GO:0009898cellular_componentinternal side of plasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004871molecular_functionsignal transducer activity
GO:0009882molecular_functionblue light photoreceptor activity
GO:0010181molecular_functionFMN binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26449.1.S1_at--841--5031Chr01:4578994..4579018 (25 bp)
GCAGATTCTTGAATGGTCCTGGCAC
LOC_Os01g09120
Os.26449.1.S1_at--315--2711Chr01:4578830..4578854 (25 bp)
AAGCTTGCACGGTTCATCTACTAAA
LOC_Os01g09120
Os.26449.1.S1_at--371--3791Chr01:4578693..4578717 (25 bp)
CTCGTTCCGTGATCTTCTACATATA
LOC_Os01g09120
Os.26449.1.S1_at--397--9431Chr01:4578422..4578674 (25 bp)
TCGGGCAAGGTAGCATTTCACGTGT
LOC_Os01g09120
Os.26449.1.S1_at--589--1191Chr01:4578373..4578397 (25 bp)
AGTATGATTTTAATGGGCTGACCCC
LOC_Os01g09120
Os.26449.1.S1_at--490--2711Chr01:4578300..4578324 (25 bp)
AAGCTTGTCTGCGTCAGGAAGCCTG
LOC_Os01g09120
Os.26449.1.S1_at--793--8171Chr01:4578284..4578308 (25 bp)
GGAAGCCTGTTGAGACCGTCCCAAT
LOC_Os01g09120
Os.26449.1.S1_at--338--5831Chr01:4578271..4578295 (25 bp)
GACCGTCCCAATAGCATTATCTAGT
LOC_Os01g09120
Os.26449.1.S1_at--20--451Chr01:4578253..4578277 (25 bp)
ATCTAGTTTCTTGCCATTTTATGAC
LOC_Os01g09120
Os.26449.1.S1_at--16--671Chr01:4578233..4578257 (25 bp)
ATGACTTGTCGACTTGCCAATGTAC
LOC_Os01g09120
Os.26449.1.S1_at--206--3611Chr01:4578209..4578233 (25 bp)
CATTGAGTTGCCTGTTGTCTGTAAA
LOC_Os01g09120
Target Sequence 
GCAGATTCTTGAATGGTCCTGGCACTAGTGTGGAGGTTTTAGAACAGATAAATCAACATATTTGTTCTGAGCAAGCTTGC
ACGGTTCATCTACTAAACTACAGGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAATGCATC
GGGCAAGGTAGCATTTCACGTGTGGGTTCNCCTTGATGAGGGTGCAAAGTATGATTTTAATGGGCTGACCCCCGAGGTAT
GGCAGCTTGGTGCTGTTGGTGCGGTGAGAGTGGCAGTCAGAAGCTTGTCTGCGTCAGGAAGCCTGTTGAGACCGTCCCAA
TAGCATTATCTAGTTTCTTGCCATTTTATGACTTGTCGACTTGCCAATGTACATTGAGTTGCCTGTTGTCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis