Browse Element(s) Details


Os.57315.1.S1_at

Description gb:AK111284.1
DB_XREF= gi:32996493
TID=Os.57315.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H07, full insert sequence.
FL= gb:AK111284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0900011/11Glutaminyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08930Os.3774.1.S1_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08930Os.3774.2.S1_x_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08940OsAffx.9705.1.S1_x_at11/111+4487858..4488283hypothetical protein
LOC_Os01g08950Os.3777.2.A1_at11/111+4490167..4491947expressed protein
LOC_Os01g08960Os.3777.1.S1_s_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08960Os.3777.1.S1_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08970Os.7840.1.S1_at11/111+4494521..4501188Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os01g08980OsAffx.10931.2.S1_s_at9/111+4501422..4501862hypothetical protein
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006424biological_processglutamyl-tRNA aminoacylation
GO:0004818molecular_functionglutamate-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57315.1.S1_at--928--291Chr01:4517095..4517119 (25 bp)
ATAGCCGAGGTGACGCGCTGACGCT
LOC_Os01g09000
Os.57315.1.S1_at--1040--4111Chr01:4517053..4517077 (25 bp)
CGCTTCCAATTCGATTCGATGATGT
LOC_Os01g09000
Os.57315.1.S1_at--545--10391Chr01:4517019..4517043 (25 bp)
TTTTCGCGTTTGATATGGCGTCTAT
LOC_Os01g09000
Os.57315.1.S1_at--166--5691Chr01:4516971..4516995 (25 bp)
GACTTGATGGTTGGAATTATGCTGA
LOC_Os01g09000
Os.57315.1.S1_at--407--6271Chr01:4516936..4516960 (25 bp)
GATGTGCACAATCTCGACTAAAATT
LOC_Os01g09000
Os.57315.1.S1_at--841--5111Chr01:4516902..4516926 (25 bp)
GCACAGTTGTTTAGTCAATTTCCAT
LOC_Os01g09000
Os.57315.1.S1_at--21--3131Chr01:4516886..4516910 (25 bp)
AATTTCCATTCCAATTGGGACATTT
LOC_Os01g09000
Os.57315.1.S1_at--391--6751Chr01:4516857..4516881 (25 bp)
GTTAATTTTGTTCTGGAGGCGCCCA
LOC_Os01g09000
Os.57315.1.S1_at--1038--7931Chr01:4516843..4516867 (25 bp)
GGAGGCGCCCAAATCTAGTAATCTA
LOC_Os01g09000
Os.57315.1.S1_at--397--3711Chr01:4516829..4516853 (25 bp)
CTAGTAATCTACTTTCTACAACATT
LOC_Os01g09000
Os.57315.1.S1_at--78--2091Chr01:4516809..4516833 (25 bp)
ACATTATAATTTGTTTGCGCTGACA
LOC_Os01g09000
Target Sequence 
ATAGCCGAGGTGACGCGCTGACGCTTGCTACCATCGCTCGTGCGCTTCCAATTCGATTCGATGATGTGTGGGGTTTTTTT
CGCGTTTGATATGGCGTCTATGAGTATGGGAGTGGGATTTAAGTGACTTGATGGTTGGAATTATGCTGAAGCCTGAAGAG
ATGTGCACAATCTCGACTAAAATTATCTTAAAAGCACAGTTGTTTAGTCAATTTCCATTCCAATTGGGACATTTTGAGGT
TAATTTTGTTCTGGAGGCGCCCAAATCTAGTAATCTACTTTCTACAACATTATAATTTGTTTGCGCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis