Browse Element(s) Details


Os.7840.1.S1_at

Description gb:AK066832.1
DB_XREF= gi:32976850
TID=Os.7840.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075A09, full insert sequence.
FL= gb:AF503585.1 gb:AK068959.1 gb:AK066832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0897011/11Structure-specific recognition protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08900NANA1+4467272..4470227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08910Os.10703.2.S1_x_at1/111+4470545..4474530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08920Os.52238.1.S1_at4/111+4475856..4480184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08930Os.3774.1.S1_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08930Os.3774.2.S1_x_at11/111+4482549..4486960DEAD/DEAH box helicase family protein, expressed
LOC_Os01g08940OsAffx.9705.1.S1_x_at11/111+4487858..4488283hypothetical protein
LOC_Os01g08950Os.3777.2.A1_at11/111+4490167..4491947expressed protein
LOC_Os01g08960Os.3777.1.S1_s_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08960Os.3777.1.S1_at11/111+4491417..4494403Phosducin family protein, expressed
LOC_Os01g08970Os.7840.1.S1_at11/111+4494521..4501188Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os01g08980OsAffx.10931.2.S1_s_at9/111+4501422..4501862hypothetical protein
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7840.1.S1_at--66--3791Chr01:4500445..4500469 (25 bp)
CTGATTTGCCTACAACCGAGATTGC
LOC_Os01g08970
Os.7840.1.S1_at--1030--5371Chr01:4500679..4500703 (25 bp)
GAAGCAACCTTACATCCAACAGTCT
LOC_Os01g08970
Os.7840.1.S1_at--95--5311Chr01:4500727..4500751 (25 bp)
GAAGGAATCTGCTGTCTACCGTGGC
LOC_Os01g08970
Os.7840.1.S1_at--1079--6091Chr01:4500791..4500815 (25 bp)
GAGTCTGACTAGAGCCACACACTGA
LOC_Os01g08970
Os.7840.1.S1_at--685--2191Chr01:4500807..4500831 (25 bp)
ACACACTGACACTTTGGCGGTTGGC
LOC_Os01g08970
Os.7840.1.S1_at--250--6771Chr01:4500847..4500871 (25 bp)
GTTAATCCCTGGAACCACTGATGCA
LOC_Os01g08970
Os.7840.1.S1_at--164--9531Chr01:4500890..4500914 (25 bp)
TCTCAGCTATTAACCTTGCATTGCG
LOC_Os01g08970
Os.7840.1.S1_at--684--10731Chr01:4500905..4500929 (25 bp)
TTGCATTGCGCTGGATGATCCGATC
LOC_Os01g08970
Os.7840.1.S1_at--116--8951Chr01:4500973..4500997 (25 bp)
TGACTCGATCACAAACCGTTACTGT
LOC_Os01g08970
Os.7840.1.S1_at--747--3111Chr01:4501056..4501080 (25 bp)
AATTTGGCGTAGCATCTATCTCGAA
LOC_Os01g08970
Os.7840.1.S1_at--281--5271Chr01:4501078..4501102 (25 bp)
GAATGCAAGACTCTGTTAGCCTATG
LOC_Os01g08970
Target Sequence 
CTGATTTGCCTACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGGCGAAGAGAAGCAACCTTAC
ATCCAACAGTCTCAAGTCGACAAGAAACGATACGAGAAGGAATCTGCTGTCTACCGTGGCGCAGCCGCCATGGACGTGGA
CTCTGGCTCCGGCGGCAACGAGTCTGACTAGAGCCACACACTGACACTTTGGCGGTTGGCGTAATGAAGAAATTTGTTAA
TCCCTGGAACCACTGATGCAGTTTGGGCACTGAAATCTTCTCAGCTATTAACCTTGCATTGCGCTGGATGATCCGATCCA
TGTGTTTGCGTACGATGGTATCGGCTGTTCTCGCCGTGGGGTGACTCGATCACAAACCGTTACTGTCTGTGTACGCCNAC
ACGAGCGATATCCCTCGGAAGCATCGTGCTGTTAAGAAGTGCTTAATTTGGCGTAGCATCTATCTCGAATGCAAGACTCT
GTTAGCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis