Browse Element(s) Details


OsAffx.14939.1.S1_at

Description tigr:9631.m03664
TID=OsAffx.14939.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3821010/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38170OsAffx.13228.1.S1_at11/113+21145945..21153622expressed protein
LOC_Os03g38190OsAffx.25410.1.S1_at10/113+21158714..21163393hypothetical protein
LOC_Os03g38200OsAffx.3432.1.S1_at8/113+21165682..21166479hypothetical protein
LOC_Os03g38210OsAffx.14939.1.S1_at10/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38210Os.57514.1.S1_x_at1/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38230Os.21210.1.S1_at11/113+21178638..21180566membrane-associated zinc metalloprotease family protein, expressed
LOC_Os03g38240OsAffx.25411.1.S1_at10/113+21183326..21186831hypothetical protein
LOC_Os03g38240OsAffx.9705.1.S1_x_at1/113+21183326..21186831hypothetical protein
LOC_Os03g38250OsAffx.13230.1.S1_at11/113+21188690..21192472NB-ARC domain containing protein
LOC_Os03g38260Os.4699.1.S1_at4/113+21193237..2119549060S ribosomal protein L19-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009740biological_processgibberellic acid mediated signaling
GO:0045449biological_processregulation of transcription
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14939.1.S1_at--901--4671Chr03:21168605..21168629 (25 bp)
GCGGAGCGCTGCAGGATCACCCAAA
LOC_Os03g38210
OsAffx.14939.1.S1_at--1043--991Chr03:21168617..21168641 (25 bp)
AGGATCACCCAAACGCGGCGAGCCT
LOC_Os03g38210
OsAffx.14939.1.S1_at--990--8431Chr03:21168645..21168669 (25 bp)
GGCCATGCTGCAGGAGCTGCACGAC
LOC_Os03g38210
OsAffx.14939.1.S1_at--678--9151NONE
TGCGCGGCTTCCTTCATGAGCAAAT
NONE
OsAffx.14939.1.S1_at--696--6351Chr03:21169796..21169820 (25 bp)
GATGCCCATCAAGTCTGAAGATTTT
LOC_Os03g38210
OsAffx.14939.1.S1_at--652--7671Chr03:21169830..21169854 (25 bp)
GGGTTGCATTCTGTACTAATTTCAC
LOC_Os03g38210
OsAffx.14939.1.S1_at--44--10511Chr03:21169850..21169874 (25 bp)
TTCACTTCAATTTCCAGGTGACGGC
LOC_Os03g38210
OsAffx.14939.1.S1_at--117--11Chr03:21169870..21169894 (25 bp)
ACGGCAAACCGGAGGTAGAGCTCAA
LOC_Os03g38210
OsAffx.14939.1.S1_at--195--2931Chr03:21169893..21169917 (25 bp)
AAGGACGACATCGAGACACTCTTCG
LOC_Os03g38210
OsAffx.14939.1.S1_at--84--5991Chr03:21169905..21169929 (25 bp)
GAGACACTCTTCGACCTTATCATAC
LOC_Os03g38210
OsAffx.14939.1.S1_at--522--9371Chr03:21169915..21169939 (25 bp)
TCGACCTTATCATACCGGCGACGTT
LOC_Os03g38210
Target Sequence 
GCGGAGCGCTGCAGGATCACCCAAACGCGGCGAGCCTCGAGGCCATGCTGCAGGAGCTGCACGACGCCATCAAGATCGAA
CCGCCGGCGCCGCCGGAAAACAGAGGAACGGAAGAAGAAGGCGGCGGCGGCGGCGGCAATCTGCGCGGCTTCCTTCATGA
GCAAATTTTTGACAAATTGATGCCCATCAAGTCTGAAGATTTTTGCATCGTGGGGTTGCATTCTGTACTAATTTCACTTC
AATTTCCAGGTGACGGCAAACCGGAGGTAGAGCTCAAGGACGACATCGAGACACTCTTCGACCTTATCATACCGGCGACG
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis