Browse Element(s) Details


Os.4699.1.S1_at

Description gb:AK102721.1
DB_XREF= gi:32987930
TID=Os.4699.1
CNT=79
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4699 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein L19 gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105G07, full insert sequence.
FL= gb:AK059309.1 gb:AK102721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2194011/1160S ribosomal protein L19-1, putative, expressed
LOC_Os03g382604/1160S ribosomal protein L19-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein
LOC_Os03g21930NANA3+12519411..12519737hypothetical protein
LOC_Os03g21940Os.4699.1.S1_at11/113+12521018..1252352560S ribosomal protein L19-1, putative, expressed
LOC_Os03g21950Os.6783.1.S1_s_at11/113+12524813..12531017Fumarate hydratase 1, mitochondrial precursor, putative, expressed
LOC_Os03g21960Os.50487.1.S1_at11/113+12535682..12538535Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os03g21964Os.52651.1.A1_at11/113+12546792..12549652expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4699.1.S1_at--972--7012Chr03:12522098..12522122 (25 bp)
GTACAAGGGAGGCTAGGCTCCCCAC
LOC_Os03g21940
Os.4699.1.S1_at--397--7472Chr03:21194173..21194197 (25 bp)
GTGTGCTCAGGCGTTTGCTGCGCAA
LOC_Os03g38260
Os.4699.1.S1_at--289--9112Chr03:21194158..21194182 (25 bp)
TGCTGCGCAAGTATCGTGAGGCCAA
LOC_Os03g38260
Os.4699.1.S1_at--328--6592Chr03:21194130..21194154 (25 bp)
GATTGACAAGCACATGTATCATGAC
LOC_Os03g38260
Os.4699.1.S1_at--232--9651Chr03:12521559..12521582 (24 bp)
TCAGGGCCCAAGAGAGCCAGCAGCT
LOC_Os03g21940
Os.4699.1.S1_at--532--2551Chr03:12521428..12521535 (25 bp)
AACTGCAGCGGCACCTAAGAAGGCA
LOC_Os03g21940
Os.4699.1.S1_at--239--5131Chr03:12521406..12521430 (25 bp)
GCAAAGAAGTGAACACCTGGCTTGA
LOC_Os03g21940
Os.4699.1.S1_at--545--7471Chr03:12521380..12521404 (25 bp)
GTGTGGTCGTCTTAGTGAAACCAGT
LOC_Os03g21940
Os.4699.1.S1_at--777--9811Chr03:12521337..12521361 (25 bp)
TTGAAATACGAACCGTTTGGCCTAG
LOC_Os03g21940
Os.4699.1.S1_at--460--8431Chr03:12521319..12521343 (25 bp)
GGCCTAGTATTTAAGTATCTTCCAA
LOC_Os03g21940
Os.4699.1.S1_at--611--411Chr03:12521303..12521327 (25 bp)
ATCTTCCAAAGTCTGATACCTTGAA
LOC_Os03g21940
Target Sequence 
GTACAAGGGAGGCTAGGCTCCCCACCAAGATCCTGTGGATGAGGAGGATGCGTGTGCTCAGGCGTTTGCTGCGCAAGTAT
CGTGAGGCCAAGAAGATTGACAAGCACATGTATCATGACATGTACATGAAGGTCAAGGGTAACATGTTCAAGAACAAGCG
TGTTCTTATGGAAAGTATCCACAAGTCTAAGGCTGAGAAGGCAAGAGAGAAGACACTCTCTGACCAGTTTGAGGCTAAGC
GTGCCAAGAGCAAGGCAAGCCGTGAGAGGAAGATTGCCAGGAGGGAGGAGAGGTTGGCTCAGGGCCCAAGAGAGCCAGCA
GCTCCTGCAGCGGCAGCTCCTGCTCAAACTGCAGCGGCACCTAAGAAGGCAAAGAAGTGAACACCTGGCTTGAAGTGTGG
TCGTCTTAGTGAAACCAGTGGAGGTGTTAGCTGAATTTTGAAATACGAACCGTTTGGCCTAGTATTTAAGTATCTTCCAA
AGTCTGATACCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis