Browse Element(s) Details


OsAffx.3292.1.S1_s_at

Description tigr:9631.m02189
TID=OsAffx.3292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=potassium uptake protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2189011/11Potassium transporter 2, putative, expressed
LOC_Os11g195201/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein
LOC_Os03g21930NANA3+12519411..12519737hypothetical protein
LOC_Os03g21940Os.4699.1.S1_at11/113+12521018..1252352560S ribosomal protein L19-1, putative, expressed
LOC_Os03g21950Os.6783.1.S1_s_at11/113+12524813..12531017Fumarate hydratase 1, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3292.1.S1_s_at--1098--8371Chr03:12507233..12507257 (25 bp)
GGCGAAGCAGGTGCGGTTCTTCATC
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--1087--3951Chr03:12507246..12507270 (25 bp)
CGGTTCTTCATCGACAGCCACGTGG
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--1155--6711Chr03:12507248..12507272 (25 bp)
GTTCTTCATCGACAGCCACGTGGCG
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--614--1691Chr03:12507261..12507285 (25 bp)
AGCCACGTGGCGAGCCCGGAGGCGG
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--68--4011Chr03:12507371..12507395 (25 bp)
CGTGCAGTGCAAGCCCGGGTCGTCG
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--225--5172Chr03:12507379..12507403 (25 bp)
GCAAGCCCGGGTCGTCGCTGCTCAA
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--641--8591Chr03:12507505..12507529 (25 bp)
TGGTCTACGTGCTATGATATGGTCA
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--1079--9531Chr03:12507508..12507532 (25 bp)
TCTACGTGCTATGATATGGTCACCC
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--435--10371Chr03:12507580..12507604 (25 bp)
TTTTTTCCTCGTCTGAATTGTGTGA
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--636--10671Chr03:12507584..12507608 (25 bp)
TTCCTCGTCTGAATTGTGTGATACA
LOC_Os03g21890
OsAffx.3292.1.S1_s_at--700--3851Chr03:12507592..12507616 (25 bp)
CTGAATTGTGTGATACAGAAGTACA
LOC_Os03g21890
Target Sequence 
GGCGAAGCAGGTGCGGTTCTTCATCGACAGCCACGTGGCGAGCCCGGAGGCGGCGGACAACAAGCAGGTGGCGGAGGAGC
TGGAGGCGCTGGCGGCGGCGAGGGACGCCGGCACGGCCTTCATCCTGGGCCACTCCCACGTGCAGTGCAAGCCCGGGTCG
TCGCTGCTCAAGAGGCTCGCCGTCGACGTCGGCTACAACTTCCTCCGCCGCAACTGCCGCGGCCCCGACGTCGCCCTCCG
CGTCCCGCCGGCGTCGCTGCTCGAGGTCGGCATGGTCTACGTGCTATGATATGGTCACCCAAAACAACGTGTTTAATTAC
TTCCTTTTCTTTTCTTTTCTTTTCCTTTTTTTTCCTCGTCTGAATTGTGTGATACAGAAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3292.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis