Browse Element(s) Details


OsAffx.25185.1.S1_at

Description tigr:9631.m02186
TID=OsAffx.25185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2186011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21830Os.11463.1.S1_at11/113+12456850..12458968expressed protein
LOC_Os03g21840Os.48943.1.S1_at8/113+12459687..12461931reticulon family protein, putative, expressed
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25185.1.S1_at--133--4251Chr03:12483810..12483834 (25 bp)
CCGTCCAGCTCGTGGTGGTGAAGAA
LOC_Os03g21860
OsAffx.25185.1.S1_at--514--2251Chr03:12483787..12483811 (25 bp)
AAATCTCCGGCATCGAATTTCGTAC
LOC_Os03g21860
OsAffx.25185.1.S1_at--53--3131Chr03:12483772..12483796 (25 bp)
AATTTCGTACTTCCGTGTGGCAGAG
LOC_Os03g21860
OsAffx.25185.1.S1_at--566--5771Chr03:12483744..12483768 (25 bp)
GACGAGATCGGTGACGCTCGAGCTC
LOC_Os03g21860
OsAffx.25185.1.S1_at--892--7971Chr03:12483705..12483729 (25 bp)
GGATCCGGCATCATGCTCGCTGGAT
LOC_Os03g21860
OsAffx.25185.1.S1_at--164--2311Chr03:12483660..12483684 (25 bp)
AAAGGTCCACAAATCCGGCGTCATG
LOC_Os03g21860
OsAffx.25185.1.S1_at--654--8371Chr03:12483644..12483668 (25 bp)
GGCGTCATGCTCACCGGATCTAGTC
LOC_Os03g21860
OsAffx.25185.1.S1_at--374--7951Chr03:12483629..12483653 (25 bp)
GGATCTAGTCGAGCCGTAGCCGTCG
LOC_Os03g21860
OsAffx.25185.1.S1_at--669--4651Chr03:12483584..12483608 (25 bp)
GCGTCGATATGTTCGGAGCCACTAC
LOC_Os03g21860
OsAffx.25185.1.S1_at--1079--4011Chr03:12483559..12483583 (25 bp)
CGTCGGCACGGATTGAGCTGGCTTC
LOC_Os03g21860
OsAffx.25185.1.S1_at--910--10251Chr03:12483419..12483443 (25 bp)
TTTGTTTTCCTCTACAACTTCCTGG
LOC_Os03g21860
Target Sequence 
CCGTCCAGCTCGTGGTGGTGAAGAAATCTCCGGCATCGAATTTCGTACTTCCGTGTGGCAGAGGGCGACGAGATCGGTGA
CGCTCGAGCTCGAGCTCTCCGGCGCGGATCCGGCATCATGCTCGCTGGATCTGGCGAGCTCAAGCGCCAAAAAGGTCCAC
AAATCCGGCGTCATGCTCACCGGATCTAGTCGAGCCGTAGCCGTCGGCGGTGTCTTCGCGGAGGTGGCGTCGATATGTTC
GGAGCCACTACCGTCGGCACGGATTGAGCTGGCTTCCACTGCCAAGCTCCTCTCCTCCCTCCCTAGCGGTGCGGGCCACG
ACGAGGCATGGGCCAACTGTGGCGGCGATGACCACCAGCTCGGCAACTCGTCGGTGGCCTCCAATTTCCCCTTTGTTTTC
CTCTACAACTTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis