Browse Element(s) Details


Os.10800.1.S1_at

Description gb:AK070859.1
DB_XREF= gi:32980882
TID=Os.10800.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10800 (NCBI UniGene Cluster)
UG_TITLE=Uroporphyrinogen decarboxylase UROD-like mRNA sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065H03, full insert sequence.
FL= gb:AK070859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2190011/11Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g220601/11Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein
LOC_Os03g21930NANA3+12519411..12519737hypothetical protein
LOC_Os03g21940Os.4699.1.S1_at11/113+12521018..1252352560S ribosomal protein L19-1, putative, expressed
LOC_Os03g21950Os.6783.1.S1_s_at11/113+12524813..12531017Fumarate hydratase 1, mitochondrial precursor, putative, expressed
LOC_Os03g21960Os.50487.1.S1_at11/113+12535682..12538535Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004853molecular_functionuroporphyrinogen decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10800.1.S1_at--120--6791Chr03:12510921..12510945 (25 bp)
GTTAGCTTGGACTGGACGGTTGATA
LOC_Os03g21900
Os.10800.1.S1_at--644--2992Chr03:12510993..12511017 (25 bp)
AATGTTGACCCTGGCGTTCTTTTTG
LOC_Os03g21900
Os.10800.1.S1_at--165--2691Chr03:12511038..12511062 (25 bp)
AAGCGGATTTTTGACACTGTGCAGA
LOC_Os03g21900
Os.10800.1.S1_at--167--1111Chr03:12511074..12511098 (25 bp)
AGTGGGCATGTATTGAACCTTGGTC
LOC_Os03g21900
Os.10800.1.S1_at--431--2991Chr03:12511128..12511152 (25 bp)
AATGTTGCCCATTTCTTTGAGGTTG
LOC_Os03g21900
Os.10800.1.S1_at--644--311Chr03:12511174..12511198 (25 bp)
ATACCTAGGCTATTCGATGCATTCC
LOC_Os03g21900
Os.10800.1.S1_at--763--7231Chr03:12511209..12511233 (25 bp)
GTCCCCACCGGCAGAAGTTGTAGAT
LOC_Os03g21900
Os.10800.1.S1_at--316--1251Chr03:12511224..12511248 (25 bp)
AGTTGTAGATTCTGCTGCTTGAGGA
LOC_Os03g21900
Os.10800.1.S1_at--502--6331Chr03:12511251..12511275 (25 bp)
GATGCAGGAAGCCATGTCTAGCGTA
LOC_Os03g21900
Os.10800.1.S1_at--220--1371Chr03:12511286..12511310 (25 bp)
AGAGCACATCTTTTGCGATTTCTGT
LOC_Os03g21900
Os.10800.1.S1_at--820--4631Chr03:12511300..12511324 (25 bp)
GCGATTTCTGTGTTTTGCGATCAAA
LOC_Os03g21900
Target Sequence 
GTTAGCTTGGACTGGACGGTTGATATGGCTGAGGGGAGGAAAAGATTGGGATCTAACATAGCGGTTCAAGGGAATGTTGA
CCCTGGCGTTCTTTTTGGGTCAAAAGAGTTCATAAGCAAGCGGATTTTTGACACTGTGCAGAAAGCTGGTAATAGTGGGC
ATGTATTGAACCTTGGTCATGGCATTAAGGTAGGCACTCCTGAGGAAAATGTTGCCCATTTCTTTGAGGTTGCAAAAGGG
ATCAGATACTGAAATACCTAGGCTATTCGATGCATTCCTTTCTCCCTAGTCCCCACCGGCAGAAGTTGTAGATTCTGCTG
CTTGAGGATAGATGCAGGAAGCCATGTCTAGCGTAGAATACCTGAAGAGCACATCTTTTGCGATTTCTGTGTTTTGCGAT
CAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis