Browse Element(s) Details


Os.16113.1.S1_s_at

Description gb:BI803284
DB_XREF= gi:16575988
DB_XREF=H106A01
CLONE=H106A01
TID=Os.16113.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16113 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200644.1 (A.thaliana) AAB63094.1) (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2187011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16113.1.S1_s_at--835--3371Chr03:12488727..12488751 (25 bp)
CACCAATGGCGTCCGTCGGCTGGAG
LOC_Os03g21870
Os.16113.1.S1_s_at--827--4651Chr03:12488719..12488743 (25 bp)
GCGTCCGTCGGCTGGAGGACCTGCA
LOC_Os03g21870
Os.16113.1.S1_s_at--28--6371Chr03:12488607..12488631 (25 bp)
GATCCACCTCGGCAGCCAGAGGCTT
LOC_Os03g21870
Os.16113.1.S1_s_at--43--3791Chr03:12488452..12488476 (25 bp)
CTCGTCATCAGTTACTGTTAATTTC
LOC_Os03g21870
Os.16113.1.S1_s_at--953--6771Chr03:12488442..12488466 (25 bp)
GTTACTGTTAATTTCTGTTCTTGAC
LOC_Os03g21870
Os.16113.1.S1_s_at--284--1971Chr03:12488439..12488463 (25 bp)
ACTGTTAATTTCTGTTCTTGACTTC
LOC_Os03g21870
Os.16113.1.S1_s_at--320--8791Chr03:12488437..12488461 (25 bp)
TGTTAATTTCTGTTCTTGACTTCTT
LOC_Os03g21870
Os.16113.1.S1_s_at--617--8471Chr03:12488396..12488420 (25 bp)
TGGCGCTTGTGTTAAAAGAGATCGG
LOC_Os03g21870
Os.16113.1.S1_s_at--1103--2331Chr03:12488382..12488406 (25 bp)
AAAGAGATCGGGTTGCTTGTCAGGT
LOC_Os03g21870
Os.16113.1.S1_s_at--369--1351Chr03:12488380..12488404 (25 bp)
AGAGATCGGGTTGCTTGTCAGGTTA
LOC_Os03g21870
Os.16113.1.S1_s_at--46--6411Chr03:12488377..12488401 (25 bp)
GATCGGGTTGCTTGTCAGGTTAAGT
LOC_Os03g21870
Target Sequence 
CACCAATGGCGTCCGTCGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACNCCGCCGAGCACCACC
GCACCATCNGTCGCGCTNTTCCGCCGCGTCGTCCTCGTNCTGGATCCACCTCGGCAGCCAGAGGCTTCTTNCCCGGCCAG
TGATCAANCCAGCTCAGTGAATCCNTTGCTCAACTCGATGCATNGCATGTNGNTCGATCATGGCGTGCTCANTTGANTCA
ATTCTTCATGGTTACTTCNCATNCCGAGTGATGACTGATCANCTCGTCATCAGTTACTGTTAATTTCTGTTCTTGACTTC
TTGTACATTCTTGAGACANTGGCGCTTGTGTTAAAAGAGATCGGGTTGCTTGTCAGGTTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16113.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis