Browse Element(s) Details


Os.51936.1.S1_at

Description gb:AK064327.1
DB_XREF= gi:32974345
TID=Os.51936.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F07, full insert sequence.
FL= gb:AK064327.1 gb:AK102778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1138011/11SNARE domain containing protein, expressed
LOC_Os03g218901/11Potassium transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006813biological_processpotassium ion transport
GO:0006944biological_processmembrane fusion
GO:0009605biological_processresponse to external stimulus
GO:0009612biological_processresponse to mechanical stimulus
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009826biological_processunidimensional cell growth
GO:0009932biological_processcell tip growth
GO:0016192biological_processvesicle-mediated transport
GO:0000299cellular_componentintegral to membrane of membrane fraction
GO:0005886cellular_componentplasma membrane
GO:0009504cellular_componentcell plate
GO:0016020cellular_componentmembrane
GO:0005484molecular_functionSNAP receptor activity
GO:0005486molecular_functiont-SNARE activity
GO:0005515molecular_functionprotein binding
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51936.1.S1_at--396--7111Chr03:5842228..5842252 (25 bp)
GTCAGCCATCTCCAAATCAAGTACA
LOC_Os03g11380
Os.51936.1.S1_at--197--3091Chr03:5842242..5842266 (25 bp)
AATCAAGTACATCGTTCACCTGCAA
LOC_Os03g11380
Os.51936.1.S1_at--307--7991Chr03:5842380..5842404 (25 bp)
GGATGATGCGCTCTCAGACTTGAGT
LOC_Os03g11380
Os.51936.1.S1_at--382--2152Chr03:5842689..5842713 (25 bp)
ACAGCAACTCTGTTTCTAGCAGTTT
LOC_Os03g11380
Os.51936.1.S1_at--1072--10011Chr03:5842705..5842729 (25 bp)
TAGCAGTTTTCTCCATCCCATGGGA
LOC_Os03g11380
Os.51936.1.S1_at--722--1131Chr03:5842743..5842767 (25 bp)
AGTGCGATTAGCAGATGCGCCTACT
LOC_Os03g11380
Os.51936.1.S1_at--669--3651Chr03:5842766..5842790 (25 bp)
CTTCATCTGGATATTCTGTCGTGTC
LOC_Os03g11380
Os.51936.1.S1_at--1000--3871Chr03:5842781..5842805 (25 bp)
CTGTCGTGTCTGAATTCTGAGCAAA
LOC_Os03g11380
Os.51936.1.S1_at--420--131Chr03:5842807..5842831 (25 bp)
ATTCAGATTCCCGTGTTGTGTTGTT
LOC_Os03g11380
Os.51936.1.S1_at--207--11Chr03:5842908..5842932 (25 bp)
ATTCCCCTTTTCTCTTAGAATCTTG
LOC_Os03g11380
Os.51936.1.S1_at--155--8751Chr03:5842934..5842958 (25 bp)
TGTAATCTGTACTCCTAAATATGCC
LOC_Os03g11380
Target Sequence 
GTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGAT
GATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAAGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGNA
AAATAAATCACTGGATGCTTTCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCC
GGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGTTTTCTCCATCCCATGGGATT
CAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCATCTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCA
GATTCCCGTGTTGTGTTGTTGTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGT
GTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAAATATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis