Browse Element(s) Details


Os.16437.1.S1_at

Description gb:AK069951.1
DB_XREF= gi:32979975
TID=Os.16437.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036E24, full insert sequence.
FL= gb:AK069951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1136011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16437.1.S1_at--575--8551Chr03:5835442..5835466 (25 bp)
TGGAGGTTGCAGTTCCCTGGAAGAA
LOC_Os03g11360
Os.16437.1.S1_at--296--2771Chr03:5835837..5835861 (25 bp)
AAGACGTGCCTTCATCAATCTGTAA
LOC_Os03g11360
Os.16437.1.S1_at--359--3191Chr03:5835852..5835876 (25 bp)
CAATCTGTAACCTTGTTTGCCTCAA
LOC_Os03g11360
Os.16437.1.S1_at--431--6851Chr03:5835866..5835890 (25 bp)
GTTTGCCTCAAATCCCTATCATTGA
LOC_Os03g11360
Os.16437.1.S1_at--1011--5231Chr03:5835895..5836106 (25 bp)
GAATAAGATTCGTCAGCTTCCCCAA
LOC_Os03g11360
Os.16437.1.S1_at--563--8311Chr03:5836127..5836151 (25 bp)
GGCTCTTCAGAACATATCGTTGCAT
LOC_Os03g11360
Os.16437.1.S1_at--481--6671Chr03:5836145..5836169 (25 bp)
GTTGCATGACAATCCAATCTCGATG
LOC_Os03g11360
Os.16437.1.S1_at--1057--3031Chr03:5836160..5836184 (25 bp)
AATCTCGATGGACCAGTTTCAACAA
LOC_Os03g11360
Os.16437.1.S1_at--586--6231Chr03:5836273..5836297 (25 bp)
GATGGCTTTACGGAATTTGAGGCAC
LOC_Os03g11360
Os.16437.1.S1_at--1033--7111Chr03:5836336..5836360 (25 bp)
GTCATGATGAGTTCCACAGCACTGG
LOC_Os03g11360
Os.16437.1.S1_at--220--1211Chr03:5836458..5836482 (25 bp)
AGTTTTTCCGATACTCTGATTTGGT
LOC_Os03g11360
Target Sequence 
TGGAGGTTGCAGTTCCCTGGAAGAATTGCAGGCAAATGGAAATTCAATTGAAGACGTGCCTTCATCAATCTGTAACCTTG
TTTGCCTCAAATCCCTATCATTGAACGGGAATAAGATTCGTCAGCTTCCCCAAAACCTACTGAAAGACTGCAAGGCTCTT
CAGAACATATCGTTGCATGACAATCCAATCTCGATGGACCAGTTTCAACAAATGGATGGCTTTACGGAATTTGAGGCACG
CCGAAGGAAAAAATTTGACAAACAGATTGATTCAAATGTCATGATGAGTTCCACAGCACTGGATGAAGGCATTGATTTGA
ACTAGTTTTTCAGAAATTTTATTTAGTTTATAATTACCCCATTAGTCAAAAGACCAACTGTAAATCTAGTGTACATATTA
GTTTTTCCGATACTCTGATTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis