Browse Element(s) Details


Os.51997.1.S1_at

Description gb:AK064500.1
DB_XREF= gi:32974518
TID=Os.51997.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-D04, full insert sequence.
FL= gb:AK064500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1140011/11Targeting protein for Xklp2 containing protein, expressed
LOC_Os09g115101/11phosphoglycerate mutase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g11430OsAffx.12826.1.S1_at11/113+5870390..5872403hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51997.1.S1_at--485--6571Chr03:5848124..5848148 (25 bp)
GATTCTTTGAACTATCTGAACCGGA
LOC_Os03g11400
Os.51997.1.S1_at--617--9471Chr03:5848138..5848162 (25 bp)
TCTGAACCGGAAACAAAATCACATT
LOC_Os03g11400
Os.51997.1.S1_at--856--171Chr03:5848165..5848189 (25 bp)
ATTTTTGTATCTTCAGTTGTCCCCT
LOC_Os03g11400
Os.51997.1.S1_at--85--8771Chr03:5848170..5848194 (25 bp)
TGTATCTTCAGTTGTCCCCTCGAGT
LOC_Os03g11400
Os.51997.1.S1_at--610--8691Chr03:5848182..5848206 (25 bp)
TGTCCCCTCGAGTTCTTTTTATGTA
LOC_Os03g11400
Os.51997.1.S1_at--736--9372Chr03:5848189..5848213 (25 bp)
TCGAGTTCTTTTTATGTACATGCCT
LOC_Os03g11400
Os.51997.1.S1_at--348--7031Chr03:5848204..5848228 (25 bp)
GTACATGCCTTATCAGTAGCTCTGT
LOC_Os03g11400
Os.51997.1.S1_at--594--4451Chr03:5848210..5848234 (25 bp)
GCCTTATCAGTAGCTCTGTGCTTCA
LOC_Os03g11400
Os.51997.1.S1_at--94--6971Chr03:5848219..5848243 (25 bp)
GTAGCTCTGTGCTTCAGATGCAACC
LOC_Os03g11400
Os.51997.1.S1_at--74--7331Chr03:5848227..5848251 (25 bp)
GTGCTTCAGATGCAACCACACCGAG
LOC_Os03g11400
Os.51997.1.S1_at--221--6331Chr03:5848235..5848259 (25 bp)
GATGCAACCACACCGAGGTTGAGAA
LOC_Os03g11400
Target Sequence 
GATTCTTTGAACTATCTGAACCGGAAACAAAATCACATTAAATTTTTGTATCTTCAGTTGTCCCCTCGAGTTCTTTTTAT
GTACATGCCTTATCAGTAGCTCTGTGCTTCAGATGCAACCACACCGAGGTTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis