Browse Element(s) Details


OsAffx.12826.1.S1_at

Description tigr:9631.m01058
TID=OsAffx.12826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1143011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g11430OsAffx.12826.1.S1_at11/113+5870390..5872403hypothetical protein
LOC_Os03g11440Os.28148.1.S1_at11/113+5875150..5878645Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os03g11450OsAffx.25057.1.S1_at11/113+5879212..5881407hypothetical protein
LOC_Os03g11460Os.5352.1.S1_at10/113+5886818..5896168expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12826.1.S1_at--957--8331Chr03:5871323..5871347 (25 bp)
GGCGGCTTCTGCGACAAGACCAAGA
LOC_Os03g11430
OsAffx.12826.1.S1_at--455--3231Chr03:5871343..5871367 (25 bp)
CAAGAGCTGTGCATGGATCGTCCGC
LOC_Os03g11430
OsAffx.12826.1.S1_at--150--1891Chr03:5871442..5871466 (25 bp)
ACGATTCCGGTCATAGTTTGGCAGA
LOC_Os03g11430
OsAffx.12826.1.S1_at--494--6151Chr03:5871515..5871539 (25 bp)
GAGGTCGCCACCGAGAACGTTGGAC
LOC_Os03g11430
OsAffx.12826.1.S1_at--543--1871Chr03:5871531..5871555 (25 bp)
ACGTTGGACGCTATGGTTTCTTCAG
LOC_Os03g11430
OsAffx.12826.1.S1_at--397--10051Chr03:5872102..5872126 (25 bp)
TAGATCATGGGTTCTCGCACATTTC
LOC_Os03g11430
OsAffx.12826.1.S1_at--675--1791Chr03:5872146..5872170 (25 bp)
ACCCTGGTGAATGCCTTGGAGTCTT
LOC_Os03g11430
OsAffx.12826.1.S1_at--764--6071Chr03:5872164..5872188 (25 bp)
GAGTCTTCTTGCTGTGACCGAACTA
LOC_Os03g11430
OsAffx.12826.1.S1_at--242--2531Chr03:5872184..5872208 (25 bp)
AACTACGGCGGGTGTCATCTTCAGG
LOC_Os03g11430
OsAffx.12826.1.S1_at--728--2131Chr03:5872248..5872272 (25 bp)
ACAGTGTCTTTTACTGGTCGCTCAT
LOC_Os03g11430
OsAffx.12826.1.S1_at--618--351Chr03:5872276..5872300 (25 bp)
ATAACTGTGCTCATGAACTTGCTTA
LOC_Os03g11430
Target Sequence 
GGCGGCTTCTGCGACAAGACCAAGAGCTGTGCATGGATCGTCCGCTGCGTTTGATCAGGATGCGTCTGGTGACGATTCCG
GTCATAGTTTGGCAGACTTGGAAAGTGCGGTAAAACCCTGGAGCGGTCCTCTTCCGTCTCCGAGGAGGTCGCCACCGAGA
ACGTTGGACGCTATGGTTTCTTCAGCTCTGCAAGGGAGGATTGATTCGGTGCAGGATGCTCTAAGTGCCGAGGCTGTTGC
TTGTTTGCATGCGTTGCGAGCTGCAGTAGATCATGGGTTCTCGCACATTTCTGTGGAGACAGGCTCTGTCACCCTGGTGA
ATGCCTTGGAGTCTTCTTGCTGTGACCGAACTACGGCGGGTGTCATCTTCAGGCAGATTAAAGCGATGATTCATTTGGAT
TTTGTTATGATCACAGTGTCTTTTACTGGTCGCTCATGTAATAACTGTGCTCATGAACTTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis