Browse Element(s) Details


Os.5352.1.S1_at

Description gb:AK058608.1
DB_XREF= gi:32968626
TID=Os.5352.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A06, full insert sequence.
FL= gb:AK121507.1 gb:AK058608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1146010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g11430OsAffx.12826.1.S1_at11/113+5870390..5872403hypothetical protein
LOC_Os03g11440Os.28148.1.S1_at11/113+5875150..5878645Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os03g11450OsAffx.25057.1.S1_at11/113+5879212..5881407hypothetical protein
LOC_Os03g11460Os.5352.1.S1_at10/113+5886818..5896168expressed protein
LOC_Os03g11470Os.26874.1.S1_at11/113+5899030..5910488Activating signal cointegrator 1 complex subunit 3, putative, expressed
LOC_Os03g11480Os.23973.1.A1_at9/113+5920919..5922792expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5352.1.S1_at--490--9711Chr03:5895665..5895689 (25 bp)
TCAACTCAGTGCTGGCTGCCGTTGT
LOC_Os03g11460
Os.5352.1.S1_at--14--6651Chr03:5895685..5895709 (25 bp)
GTTGTTCCTCCCTTGTATCAAGTAT
LOC_Os03g11460
Os.5352.1.S1_at--653--9931Chr03:5895743..5895767 (25 bp)
TACGGATCTCGCATCATTTTTCTGA
LOC_Os03g11460
Os.5352.1.S1_at--663--10451Chr03:5895797..5895821 (25 bp)
TTAGAGAGCCCAGTGCTTTGCTAGC
LOC_Os03g11460
Os.5352.1.S1_at--931--9071Chr03:5895815..5895839 (25 bp)
TGCTAGCTTAGTACATCTGGCGAAC
LOC_Os03g11460
Os.5352.1.S1_at--319--1571Chr03:5895845..5895869 (25 bp)
AGCTATTTGTCATCTTTTTATCCAT
LOC_Os03g11460
Os.5352.1.S1_at--110--5231Chr03:5895900..5895924 (25 bp)
GAATAATAACGGGAACCTTCCTCTG
LOC_Os03g11460
Os.5352.1.S1_at--598--10871Chr03:5895957..5895981 (25 bp)
TTGGCTAGTGTGTCCAGTCTAACTG
LOC_Os03g11460
Os.5352.1.S1_at--736--2051Chr03:5896067..5896091 (25 bp)
ACTTGTTGTAATTTGAATCCCCGTG
LOC_Os03g11460
Os.5352.1.S1_at--774--5231Chr03:5896081..5896105 (25 bp)
GAATCCCCGTGATGTCGAAATCTCA
LOC_Os03g11460
Os.5352.1.S1_at--945--2731Chr03:5896146..5896170 (25 bp)
AAGAATGCTCTTGTGCTTCATGTAA
NONE
Target Sequence 
TCAACTCAGTGCTGGCTGCCGTTGTTCCTCCCTTGTATCAAGTATAGGTCCTGTATATTGTGGAAAGCAAGTTGAAACTA
CGGATCTCGCATCATTTTTCTGATGAAGGAAGAGTATTAGCTTCATACTTTGTTAGAGAGCCCAGTGCTTTGCTAGCTTA
GTACATCTGGCGAACTATGTAGCTATTTGTCATCTTTTTATCCATGATGATGAAGTGTTGGCTGGTTAGAGGGGGGAATA
ATAACGGGAACCTTCCTCTGGGTTCTTTTGTTCGTTTAGGATGGGATGCAAATTGGCTAGTGTGTCCAGTCTAACTGACC
AGTGTTAGTCAGCAGTTAATTACTAGAGTTATGTAGTTCCGAAAGCATTCATGGAACAAGTGGCGGGTAAGGGAGCTTGG
AAACTTGTTGTAATTTGAATCCCCGTGATGTCGAAATCTCAATGGGTTCTTGTAAATTTAAAATGAAAATATAACTGAGG
TAAGAATGCTCTTGTGCTTCATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis