Browse Element(s) Details


Os.23973.1.A1_at

Description gb:AK066426.1
DB_XREF= gi:32976444
TID=Os.23973.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063F19, full insert sequence.
FL= gb:AK066426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g114809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11460Os.5352.1.S1_at10/113+5886818..5896168expressed protein
LOC_Os03g11470Os.26874.1.S1_at11/113+5899030..5910488Activating signal cointegrator 1 complex subunit 3, putative, expressed
LOC_Os03g11480Os.23973.1.A1_at9/113+5920919..5922792expressed protein
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23973.1.A1_at--1131--7751Chr03:5922251..5922275 (25 bp)
GGTGATCCTCTGTACAAGGCAGTTC
LOC_Os03g11480
Os.23973.1.A1_at--858--2931Chr03:5922266..5922290 (25 bp)
AAGGCAGTTCTCATGATTCCCACAA
LOC_Os03g11480
Os.23973.1.A1_at--602--91Chr03:5922308..5922332 (25 bp)
ATTCCTATGGACCTGATCGCGCTTG
LOC_Os03g11480
Os.23973.1.A1_at--106--6251Chr03:5922358..5922382 (25 bp)
GATGGACCTTGCTATCAGTTGTTTT
LOC_Os03g11480
Os.23973.1.A1_at--134--10471Chr03:5922433..5922457 (25 bp)
TTACCTTTGCTTTGGAGGGCTCAAC
LOC_Os03g11480
Os.23973.1.A1_at--381--7071Chr03:5922460..5922484 (25 bp)
GTCAAATCCCAACCGAAGGCACTGT
LOC_Os03g11480
Os.23973.1.A1_at--297--8151Chr03:5922556..5922580 (25 bp)
GGACAAGCAGGTTTACTCGGGTTAT
LOC_Os03g11480
Os.23973.1.A1_at--355--8151Chr03:5922596..5922620 (25 bp)
GGAAACTTGCCGAATGCCATCAAAC
LOC_Os03g11480
Os.23973.1.A1_at--154--2071Chr03:5922681..5922705 (25 bp)
ACTTGCCATTTCACTCAGCTTGGTA
LOC_Os03g11480
Os.23973.1.A1_at--49--7851NONE
GGTACTTGTGTTTTTGCTATCTTTT
NONE
Os.23973.1.A1_at--809--4871NONE
GCTATCTTTTGCACCTAAATCTGAC
NONE
Target Sequence 
GGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCT
TGCTCACCAGCGAGGCCTNTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTC
AGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACT
AATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTA
CTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCA
TTGGAGNACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCAC
CTAAATCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23973.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis