Browse Element(s) Details


Os.54293.1.S1_at

Description gb:AK103114.1
DB_XREF= gi:32988323
TID=Os.54293.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31162 putative mitochondrial carrier protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119F13, full insert sequence.
FL= gb:AK103114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1151011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11480Os.23973.1.A1_at9/113+5920919..5922792expressed protein
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54293.1.S1_at--216--811Chr03:5940441..5940465 (25 bp)
ATGGTACATACCTGCATCTGCATTC
LOC_Os03g11510
Os.54293.1.S1_at--252--1891Chr03:5940416..5940440 (25 bp)
ACGTTCATGGCAGTGGAGTTCCTCA
LOC_Os03g11510
Os.54293.1.S1_at--976--6691Chr03:5940399..5940423 (25 bp)
GTTCCTCAGGGATCATTTCAACGAA
LOC_Os03g11510
Os.54293.1.S1_at--889--6391Chr03:5940372..5940396 (25 bp)
GATCGATACAGATGCCCGTGAACTA
LOC_Os03g11510
Os.54293.1.S1_at--289--5471Chr03:5940353..5940377 (25 bp)
GAACTAACCGGCCTGTCAATGGACA
LOC_Os03g11510
Os.54293.1.S1_at--88--5291Chr03:5940293..5940317 (25 bp)
GAAGGCCTGAAGTAGTTCCCTGTTT
LOC_Os03g11510
Os.54293.1.S1_at--740--3111Chr03:5940249..5940273 (25 bp)
AATTTCTGATTTCTCCGTCAAGTAA
LOC_Os03g11510
Os.54293.1.S1_at--1155--5171Chr03:5940193..5940217 (25 bp)
GCAATGTCAGCCAAGTTTCAACGTT
LOC_Os03g11510
Os.54293.1.S1_at--267--8851Chr03:5940142..5940166 (25 bp)
TGATCATCCTTCATCTACTCAGTAT
LOC_Os03g11510
Os.54293.1.S1_at--113--1231Chr03:5940076..5940100 (25 bp)
AGTTCTTCTGGGTCTTCAAAGCCCA
LOC_Os03g11510
Os.54293.1.S1_at--220--751Chr03:5940052..5940076 (25 bp)
ATGTTTGGACCTAACTGATGCACCC
LOC_Os03g11510
Target Sequence 
ATGGTACATACCTGCATCTGCATTCACGTTCATGGCAGTGGAGTTCCTCAGGGATCATTTCAACGAAAAGATCGATACAG
ATGCCCGTGAACTAACCGGCCTGTCAATGGACACAAGATCAGAAGTTGAGGAAGCTGCATGAAGCCCTGAAGGCCTGAAG
TAGTTCCCTGTTTTGTAGGACTGATCCAGAGGAATTTCTGATTTCTCCGTCAAGTAAAGTTCATTTCACGAATATAAGTG
TGAAAAATGCAATGTCAGCCAAGTTTCAACGTTTACAAGCGTAGAAGAGATAAGGAAACTGATCATCCTTCATCTACTCA
GTATTTTTTTGGGGGTGTTGGAAACCAGGATTGTTGGTGGGNNGTAGTTCTTCTGGGTCTTCAAAGCCCATGTTTGGACC
TAACTGATGCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis