Browse Element(s) Details


Os.15126.1.S1_at

Description gb:AK063756.1
DB_XREF= gi:32973774
TID=Os.15126.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A07, full insert sequence.
FL= gb:AK063756.1 gb:AK101976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1153010/11diphosphonucleotide phosphatase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein
LOC_Os03g11560Os.16764.1.S1_at11/113+5973248..5976549digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g11570Os.8973.1.S1_at11/113+5979008..5982883PCI domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15126.1.S1_at--180--7431Chr03:5956794..5956818 (25 bp)
GTGTTCTCGGCTACTCATCAGCTAG
LOC_Os03g11530
Os.15126.1.S1_at--1066--10571Chr03:5956797..5956821 (25 bp)
TTCTCGGCTACTCATCAGCTAGCTT
LOC_Os03g11530
Os.15126.1.S1_at--1109--3711Chr03:5956822..5956846 (25 bp)
CTACGTCGAGGAGGGCACAACCGAG
LOC_Os03g11530
Os.15126.1.S1_at--21--7811Chr03:5956894..5956918 (25 bp)
GGTCGACATCGCCATGTACGGCCAT
LOC_Os03g11530
Os.15126.1.S1_at--552--2091Chr03:5956899..5956923 (25 bp)
ACATCGCCATGTACGGCCATGTCCA
LOC_Os03g11530
Os.15126.1.S1_at--639--751Chr03:5956907..5956931 (25 bp)
ATGTACGGCCATGTCCATGGCTACG
LOC_Os03g11530
Os.15126.1.S1_at--995--751Chr03:5956917..5956941 (25 bp)
ATGTCCATGGCTACGAGAGAACCTG
LOC_Os03g11530
Os.15126.1.S1_at--979--831Chr03:5956923..5956947 (25 bp)
ATGGCTACGAGAGAACCTGCCCAGT
LOC_Os03g11530
Os.15126.1.S1_at--1147--1351Chr03:5956932..5956954 (23 bp)
AGAGAACCTGCCCAGTCTACGAGAA
LOC_Os03g11530
Os.15126.1.S1_at--329--9531NONE
TCTACGAGAATGTGTGCGTGGCGAA
NONE
Os.15126.1.S1_at--550--4591Chr03:5957784..5957808 (25 bp)
GCGAAGGCGGCGAGCCACTACAGCG
LOC_Os03g11530
Target Sequence 
GTGTTCTCGGCTACTCATCAGCTAGCTTNCTACGTCGAGGAGGGCACAACCGAGGAGCCCATGGGCNAGGGAGAGCCTCC
AGCCGCTNTGGCAGAAGTACAAGGTCGACATCGCCATGTACGGCCATGTCCATGGCTACGAGAGAACCTGCCCAGTCTAC
GAGAATGTGTGCGTGGCGAAGGCGGCGAGCCACTACAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis