Browse Element(s) Details


Os.1376.1.S1_at

Description gb:AB111916.1
DB_XREF= gi:31580976
GEN=OsRPA70b
TID=Os.1376.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1376 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPA70b mRNA for replication protein A 70b, complete cds.
PROD=replication protein A 70b
FL= gb:AB111916.1 gb:AF009179.1 gb:AK060582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1154011/11replication factor-a protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein
LOC_Os03g11560Os.16764.1.S1_at11/113+5973248..5976549digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g11570Os.8973.1.S1_at11/113+5979008..5982883PCI domain containing protein, expressed
LOC_Os03g11580Os.15657.1.S1_at11/113+5985834..5990834expressed protein
LOC_Os03g11580Os.11750.1.A1_at1/113+5985834..5990834expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1376.1.S1_at--311--6631Chr03:5960935..5960959 (25 bp)
GTTGGTGGCGCGAGATCCATGTACA
LOC_Os03g11540
Os.1376.1.S1_at--848--7951Chr03:5961009..5961138 (25 bp)
GGATAAGCCTGTGTTCTTCAGTCTG
LOC_Os03g11540
Os.1376.1.S1_at--183--10451Chr03:5961149..5961173 (25 bp)
TTAGCCTTATCAAGCCTGACCAAAC
LOC_Os03g11540
Os.1376.1.S1_at--574--5831Chr03:5961166..5961190 (25 bp)
GACCAAACCATGTGGTACCGAGCTT
LOC_Os03g11540
Os.1376.1.S1_at--1013--7311Chr03:5961270..5961383 (25 bp)
GTGCTCACTGAGGTACATCATGGTC
LOC_Os03g11540
Os.1376.1.S1_at--561--2091Chr03:5961373..5961397 (25 bp)
ACATCATGGTCATCAAGGTCTCCGA
LOC_Os03g11540
Os.1376.1.S1_at--363--5811Chr03:5961396..5961420 (25 bp)
GACCCTACTGGTGAGGCCTGGCTTT
LOC_Os03g11540
Os.1376.1.S1_at--764--7711Chr03:5961704..5961728 (25 bp)
GGGTGATGACAGTTACCTTCTCAAG
LOC_Os03g11540
Os.1376.1.S1_at--797--931Chr03:5961733..5961757 (25 bp)
AGGAAGCTACTTGGGTTCCTCACCT
LOC_Os03g11540
Os.1376.1.S1_at--914--9291Chr03:5961760..5961784 (25 bp)
TCCGCGTCAGCGTAACTCAGAATGA
LOC_Os03g11540
Os.1376.1.S1_at--996--1111Chr03:5961822..5961846 (25 bp)
AGTGAAGCTCCGGTAGACCACGCAG
LOC_Os03g11540
Target Sequence 
GTTGGTGGCGCGAGATCCATGTACAGTGATNGAGTTTTTCTGTCTCACATCACAAGTGACCCCAACTTGGGTCAGGATAA
GCCTGTGTTCTTCAGTCTGAATGCCTATATTAGCCTTATCAAGCCTGACCAAACCATGTGGTACCGAGCTTGCAAGACCT
GCAACAAGAAGGTGACTGAGGCAATNGGATCAGGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTG
AGGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCTCTGTTCAATGATCAGGCAGAGAGGAT
TGTTGGCTGCAGTGCAGACGAGCTTGATCGGATTAGGAAGGAGGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAG
CTACTTGGGTTCCTCACCTGTTCCGCGTCAGCGTAACTCAGAATGAGTACATGAATGAGAAGAGGCAGAGGATCACTGTG
AGGAGTGAAGCTCCGGTAGACCACGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis