Browse Element(s) Details


Os.16764.1.S1_at

Description gb:AK067931.1
DB_XREF= gi:32977949
TID=Os.16764.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127L22, full insert sequence.
FL= gb:AK067931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1156011/11digalactosyldiacylglycerol synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein
LOC_Os03g11560Os.16764.1.S1_at11/113+5973248..5976549digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g11570Os.8973.1.S1_at11/113+5979008..5982883PCI domain containing protein, expressed
LOC_Os03g11580Os.15657.1.S1_at11/113+5985834..5990834expressed protein
LOC_Os03g11580Os.11750.1.A1_at1/113+5985834..5990834expressed protein
LOC_Os03g11590Os.8125.1.S1_x_at11/113+5992253..5996314integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0042550biological_processphotosystem I stabilization
GO:0005739cellular_componentmitochondrion
GO:0009707cellular_componentchloroplast outer membrane
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046480molecular_functiongalactolipid galactosyltransferase activity
GO:0046481molecular_functionUDP-galactose:MGDG galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16764.1.S1_at--461--691Chr03:5973817..5973841 (25 bp)
ATGACCTATCTTGGGAGGCCGCGAC
LOC_Os03g11560
Os.16764.1.S1_at--757--891Chr03:5973802..5973826 (25 bp)
AGGCCGCGACCGAGAGATTCATGGA
LOC_Os03g11560
Os.16764.1.S1_at--164--811Chr03:5973782..5973806 (25 bp)
ATGGAAGCCGCGGAGCTGAACCTTC
LOC_Os03g11560
Os.16764.1.S1_at--925--7151Chr03:5973719..5973743 (25 bp)
GTCTCTCTCCCTGCTTTTATGAGGA
LOC_Os03g11560
Os.16764.1.S1_at--450--1211Chr03:5973660..5973684 (25 bp)
AGTTTACCTGCATCAAGCACTCTCA
LOC_Os03g11560
Os.16764.1.S1_at--160--7791Chr03:5973608..5973632 (25 bp)
GGTGCTGTTCCGAAGACGCTGCAAC
LOC_Os03g11560
Os.16764.1.S1_at--189--7351Chr03:5973570..5973594 (25 bp)
GTGCAACGATCTAGGTTTGGCTCCC
LOC_Os03g11560
Os.16764.1.S1_at--899--6291Chr03:5973508..5973532 (25 bp)
GATGATGTAACTTCTCTTGAGCCCC
LOC_Os03g11560
Os.16764.1.S1_at--632--7451Chr03:5973473..5973497 (25 bp)
GTGTCATTTCCTTTTCTGCACATTA
LOC_Os03g11560
Os.16764.1.S1_at--27--2431Chr03:5973291..5973315 (25 bp)
AAAACTGTGATGTGATTCTGCCCAT
LOC_Os03g11560
Os.16764.1.S1_at--169--9491Chr03:5973275..5973299 (25 bp)
TCTGCCCATCAGTGTCTTCTTAATG
LOC_Os03g11560
Target Sequence 
ATGACCTATCTTGGGAGGCCGCGACCGAGAGATTCATGGAAGCCGCGGAGCTGAACCTTCCTATCTCAGCAGAGCCAAGA
ATCCATCAAACATCCAAGGTCTCTCTCCCTGCTTTTATGAGGACTCGTAAACTGAAACAGAGCTTGGAGGATGCATCAGT
TTACCTGCATCAAGCACTCTCAGGACTTGAAGTCACCCGTCGCGCCTTCGGTGCTGTTCCGAAGACGCTGCAACCTGATG
AGCAGCTGTGCAACGATCTAGGTTTGGCTCCCGCCAAGAAAAAGAGGTTGAAATTGAAGCTGATGACCTGATGATGTAAC
TTCTCTTGAGCCCCTGATTGCATNGTGTCATTTCCTTTTCTGCACATTANATCCGAGGAGTATGTATGAATCCTAATGGA
GGATCAGTGCATTTTCCATTAGTATGTTTACTTAGTTCAGGATGTAAATTACACTACAAATGTAATTGGACTATTGGAGA
CTTNGNAGTACTAGTACTNCTAACCTAGTGNCTTTATTGAAAATTTAAAACTGTGATGTGATTCTGCCCATCAGTGTCTT
CTTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis