Browse Element(s) Details


Os.49152.1.S1_x_at

Description gb:AK061935.1
DB_XREF= gi:32971953
TID=Os.49152.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D04, full insert sequence.
FL= gb:AK061935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1152011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11480Os.23973.1.A1_at9/113+5920919..5922792expressed protein
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein
LOC_Os03g11560Os.16764.1.S1_at11/113+5973248..5976549digalactosyldiacylglycerol synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49152.1.S1_x_at--970--7591Chr03:5952185..5952298 (25 bp)
GGGCATCTGTTTCTGATACTCTGCT
LOC_Os03g11520
Os.49152.1.S1_x_at--405--9611Chr03:5952353..5952377 (25 bp)
TAGCGTGCTTGGAGGGAACCCAACT
LOC_Os03g11520
Os.49152.1.S1_x_at--287--5451Chr03:5952368..5952392 (25 bp)
GAACCCAACTTCCATTTCTGGGCAG
LOC_Os03g11520
Os.49152.1.S1_x_at--9--10571Chr03:5952383..5952407 (25 bp)
TTCTGGGCAGAAACCGTTTTGGGCT
LOC_Os03g11520
Os.49152.1.S1_x_at--1080--5271Chr03:5952460..5952484 (25 bp)
GAATGTTGCCTGACCTGATGCATCA
LOC_Os03g11520
Os.49152.1.S1_x_at--255--4971Chr03:5952479..5952503 (25 bp)
GCATCAGCTCAATGCCATTACGCTA
LOC_Os03g11520
Os.49152.1.S1_x_at--922--1211Chr03:5952506..5952530 (25 bp)
AGTTCATCGCTCAATGTTCTCAGTG
LOC_Os03g11520
Os.49152.1.S1_x_at--10--7051Chr03:5952539..5952563 (25 bp)
GTACAATATCCAGTTCCTTTTCTTT
LOC_Os03g11520
Os.49152.1.S1_x_at--898--2871Chr03:5952645..5952669 (25 bp)
AAGGGCACTTGTCTGCACGACATTC
LOC_Os03g11520
Os.49152.1.S1_x_at--651--1691Chr03:5952689..5952713 (25 bp)
AGCCAATTTTTGCTAGCTTCTCTTG
LOC_Os03g11520
Os.49152.1.S1_x_at--559--4911Chr03:5952704..5952728 (25 bp)
GCTTCTCTTGGATGCTGTATGTTGC
LOC_Os03g11520
Target Sequence 
GGGCATCTGTTTCTGATACTCTGCTGAAGCTTATGGATTATGGAGATGACGATGAAGAGGACAACATCGATGNGNCGAAT
AGCGTGCTTGGAGGGAACCCAACTTCCATTTCTGGGCAGAAACCGTTTTGGGCTGTGTGAAAAATNAGTTTGTTCTGTAC
TCCAATGCANGTTGAGTGCAGGTAGAGAATGTTGCCTGACCTGATGCATCAGCTCAATGCCATTACGCTANCAGTTCATC
GCTCAATGTTCTCAGTGTGAGCTATGTACAATATCCAGTTCCTTTTCTTTTGGGGTGGTTCAAATGTNGACNTGATGGTC
ATTTTTCTTTTGACATATAATCCTGTAGAAGCTAGTGTGATCAGGCAGGGCAAGGGCACTTGTCTGCACGACATTCAGAG
TGCTGATGATGCTTAAGCCAATTTTTGCTAGCTTCTCTTGGATGCTGTATGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49152.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis