Browse Element(s) Details


Os.23247.1.A1_at

Description gb:AK067637.1
DB_XREF= gi:32977655
TID=Os.23247.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109I22, full insert sequence.
FL= gb:AK067637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g115006/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11470Os.26874.1.S1_at11/113+5899030..5910488Activating signal cointegrator 1 complex subunit 3, putative, expressed
LOC_Os03g11480Os.23973.1.A1_at9/113+5920919..5922792expressed protein
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23247.1.A1_at--967--5571Chr03:5935749..5935773 (25 bp)
GAAATGGTATAACTCGTCTCTTGGT
LOC_Os03g11500
Os.23247.1.A1_at--72--2571Chr03:5935707..5935731 (25 bp)
AACTGTTGCTGACTTTTCTTTTACT
LOC_Os03g11500
Os.23247.1.A1_at--837--6751Chr03:5935634..5935658 (25 bp)
GTTCACATTTTCATCCACAAGCAGG
LOC_Os03g11500
Os.23247.1.A1_at--549--3291Chr03:5935542..5935566 (25 bp)
CAAATCTGGGCATGCGGAGGCTCGC
LOC_Os03g11500
Os.23247.1.A1_at--827--1371Chr03:5934789..5934813 (25 bp)
AGAGCGACTTCTTTCACACTCGATC
LOC_Os03g11500
Os.23247.1.A1_at--739--2071Chr03:5934753..5934777 (25 bp)
ACATTGGGTTCATGGTCCCTCTGAA
LOC_Os03g11500
Os.23247.1.A1_at--13--7851Chr03:5934698..5934722 (25 bp)
GGTAGCAGTATCTGTTCAACGCGAT
NONE
Os.23247.1.A1_at--370--3531NONE
CATATCTCGTTTGTTTCCGTTCGGA
NONE
Os.23247.1.A1_at--982--6711NONE
GTTCGGAATTGCCACTTTTCACCAT
NONE
Os.23247.1.A1_at--441--10331Chr03:5934600..5934624 (25 bp)
TTTCACCATGGAGTTGCACTGCATC
NONE
Os.23247.1.A1_at--185--5111Chr03:5934585..5934609 (25 bp)
GCACTGCATCTTGTAATCGCATGGG
NONE
Target Sequence 
GAAATGGTATAACTCGTCTCTTGGTTAATGTAACACTAAACTAACTGTTGCTGACTTTTCTTTTACTTCACAAATCTATT
CAGAGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCACAAGCAGGCAGCGGCAACAGATATTTTG
ATGTCCTTCATACATGGACTCGTGTTAGCACATTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGAT
TGATGAGAAATATAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTTACTCAACAGAGCGACTTCTTTCACACTCGATCG
TGTGGAGGGCACATTGGGTTCATGGTCCCTCTGAAGAGAAGCTCGAGTAGGAGGAAGCAGGCGAAGGTAGCAGTATCTGT
TCAACGCGATATTATTAGAGCAATTCGACATACTGCATAGGATGCTTTGCATATCTCGTTTGTTTCCGTTCGGAATTGCC
ACTTTTCACCATGGAGTTGCACTGCATCTTGTAATCGCATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23247.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis