Browse Element(s) Details


Os.4900.2.A1_x_at

Description gb:AK100623.1
DB_XREF= gi:32985832
TID=Os.4900.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108I10, full insert sequence.
FL= gb:AK100623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein
LOC_Os03g11560Os.16764.1.S1_at11/113+5973248..5976549digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g11570Os.8973.1.S1_at11/113+5979008..5982883PCI domain containing protein, expressed
LOC_Os03g11580Os.15657.1.S1_at11/113+5985834..5990834expressed protein
LOC_Os03g11580Os.11750.1.A1_at1/113+5985834..5990834expressed protein
LOC_Os03g11590Os.8125.1.S1_x_at11/113+5992253..5996314integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4900.2.A1_x_at--469--8411Chr03:5963179..5963203 (25 bp)
GGCCGCTACTGAGCACCGAAATGGA
LOC_Os03g11550
Os.4900.2.A1_x_at--1150--831Chr03:5963159..5963183 (25 bp)
ATGGAGCAGCCATAGCAACACCGCC
LOC_Os03g11550
Os.4900.2.A1_x_at--740--8891Chr03:5963117..5963141 (25 bp)
TGAGGGCAGTAGCTCTTGCTTCCAG
LOC_Os03g11550
Os.4900.2.A1_x_at--975--1351Chr03:5963089..5963113 (25 bp)
AGAGCAGCTGCGTGCTACAGGAAGA
LOC_Os03g11550
Os.4900.2.A1_x_at--326--5011Chr03:5963017..5963041 (25 bp)
GCAGGAGATGCCATGCGTGTGCACC
LOC_Os03g11550
Os.4900.2.A1_x_at--1162--7891Chr03:5962969..5962993 (25 bp)
GGTTGAAGGCTTCCTGTACAAGTAC
LOC_Os03g11550
Os.4900.2.A1_x_at--334--4271Chr03:5962897..5962921 (25 bp)
CCTGACCCCTGCTGAGTTTGTGAAG
LOC_Os03g11550
Os.4900.2.A1_x_at--640--1971Chr03:5962781..5962805 (25 bp)
ACTGCTGCTCTTGCAAGTGTTACTA
LOC_Os03g11550
Os.4900.2.A1_x_at--1033--1651Chr03:5962745..5962769 (25 bp)
AGCCCTTCACCTTAGCTTCAGAATT
LOC_Os03g11550
Os.4900.2.A1_x_at--267--8051Chr03:5962648..5962672 (25 bp)
GGAGATTTGCTCCTGCTGACATAAA
LOC_Os03g11550
Os.4900.2.A1_x_at--795--2111Chr03:5962614..5962638 (25 bp)
ACATGGCTCCATTGATCATTGTTAA
LOC_Os03g11550
Target Sequence 
GGCCGCTACTGAGCACCGAAATGGAGCAGCCATAGCAACACCGCCATTTTCGGCACTGGCGGTGAGGGCAGTAGCTCTTG
CTTCCAGGGGAGAGCAGCTGCGTGCTACAGGAAGAGTTGCGGCAAGAGCCAAGAGCATGGGAGATGTGGAGAGGATCATG
ATGCAGGAGATGCCATGCGTGTGCACCAAGGGGCTCCCCAATGGCAAGAGGGTTGAAGGCTTCCTGTACAAGTACAGGAA
AGGCGAGGAGGTGAGGATTGTCTGTGTTTGCCATGGCAGCTTCCTGACCCCTGCTGAGTTTGTGAAGCACGCCGGAGGTG
GAGATGTCGCGAACCCGCTTCGGCATATCGTCGTCAACCCTATCCCGCCATCCTTATACTGAACCTCTCTGTCAGCTCAC
TGCTGCTCTTGCAAGTGTTACTATAGCTTCAGTCAGCCCTTCACCTTAGCTTCAGAATTCAGTTCAGAGTAGAATCTGAT
TGTGAGACTTGTCTTAATGTTACAAGTGTTTATTATGCTAAGGAGACANNGGGAGATTTGCTCCTGCTGACATAAAAAGT
GGTTAACATGGCTCCATTGATCATTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4900.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis