Browse Element(s) Details

Os.12674.1.S1_s_at

Description

gb:AK059280.1
DB_XREF= gi:32969298
TID=Os.12674.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C11, full insert sequence.
FL= gb:AK059280.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g11340	11/11	leucine-rich repeat resistance protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g11300	OsAffx.25053.1.S1_at	11/11	3	+	5793553..5795613	expressed protein
LOC_Os03g11310	Os.50947.1.S1_x_at	11/11	3	+	5796992..5799853	expressed protein
LOC_Os03g11310	Os.24634.1.A1_s_at	11/11	3	+	5796992..5799853	expressed protein
LOC_Os03g11310	OsAffx.12824.1.S1_at	11/11	3	+	5796992..5799853	expressed protein
LOC_Os03g11320	Os.5477.1.S2_at	11/11	3	+	5802770..5807225	Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320	Os.5477.1.S1_at	11/11	3	+	5802770..5807225	Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330	OsAffx.12825.1.S1_s_at	11/11	3	+	5808129..5813883	Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340	Os.12674.1.S1_s_at	11/11	3	+	5819824..5823946	leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340	Os.50482.1.S1_at	11/11	3	+	5819824..5823946	leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350	OsAffx.2198.4.S1_at	11/11	3	+	5828014..5829498	Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360	Os.16437.1.S1_at	11/11	3	+	5831689..5836578	Leucine Rich Repeat family protein, expressed
LOC_Os03g11370	Os.7036.1.S1_at	11/11	3	+	5837342..5839072	B3 DNA binding domain containing protein, expressed
LOC_Os03g11380	OsAffx.25055.1.S1_s_at	11/11	3	+	5839832..5843006	SNARE domain containing protein, expressed
LOC_Os03g11380	OsAffx.25055.1.S1_at	11/11	3	+	5839832..5843006	SNARE domain containing protein, expressed
LOC_Os03g11380	Os.51936.1.S1_at	11/11	3	+	5839832..5843006	SNARE domain containing protein, expressed
LOC_Os03g11390	OsAffx.25056.1.S1_at	10/11	3	+	5843172..5843815	hypothetical protein
LOC_Os03g11400	OsAffx.3200.1.S1_s_at	11/11	3	+	5844753..5848379	Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400	Os.51997.1.S1_at	11/11	3	+	5844753..5848379	Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400	OsAffx.3200.1.S1_at	11/11	3	+	5844753..5848379	Targeting protein for Xklp2 containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0006952	biological_process	defense response
GO:0007165	biological_process	signal transduction
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12674.1.S1_s_at--758--273	1	Chr03:5820993..5821112 (25 bp)	AAGAACCTTCGTCACCTGGATGTTG	LOC_Os03g11340
Os.12674.1.S1_s_at--330--705	1	Chr03:5820968..5820992 (25 bp)	GTAACAACCACTTGATAGGCACCCT	LOC_Os03g11340
Os.12674.1.S1_s_at--632--507	1	Chr03:5820950..5820974 (25 bp)	GCACCCTCAGGGATTTAATTGGCAA	LOC_Os03g11340
Os.12674.1.S1_s_at--949--849	1	Chr03:5820931..5820955 (25 bp)	TGGCAATGGGAATGGTTTCCCCTCC	LOC_Os03g11340
Os.12674.1.S1_s_at--45--37	1	Chr03:5820790..5820814 (25 bp)	ATAATGATTTGACTGGCGTTCTGCC	LOC_Os03g11340
Os.12674.1.S1_s_at--864--837	1	Chr03:5820776..5820800 (25 bp)	GGCGTTCTGCCAGACCAGATTGCAA	LOC_Os03g11340
Os.12674.1.S1_s_at--555--263	1	Chr03:5820658..5820767 (25 bp)	AACCTCGAGATACTGCACTTGTCTA	LOC_Os03g11340
Os.12674.1.S1_s_at--589--797	1	Chr03:5820619..5820643 (25 bp)	GGATCGATATCACCAAAGCTAGTTC	LOC_Os03g11340
Os.12674.1.S1_s_at--536--245	1	Chr03:5820459..5820483 (25 bp)	AACAACTTCATTGGGAGGATTCCTG	LOC_Os03g11340
Os.12674.1.S1_s_at--500--733	1	Chr03:5820238..5820262 (25 bp)	GTGCTTGAATTACCTGATGCTGACA	LOC_Os03g11340
Os.12674.1.S1_s_at--828--141	1	Chr03:5820086..5820110 (25 bp)	AGACACTGTTTCTCACAGCACTGTT	LOC_Os03g11340

Target Sequence

AAGAACCTTCGTCACCTGGATGTTGGTAACAACCACTTGATAGGCACCCTCAGGGATTTAATTGGCAATGGGAATGGTTT
CCCCTCCCTCAGAAATCTGTATCTTAACAATAATGATTTGACTGGCGTTCTGCCAGACCAGATTGCAAANTTGACAAACC
TCGAGATACTGCACTTGTCTAATAATAGGCTGATTGGATCGATATCACCAAAGCTAGTTCATATTCCAAGATTGACCTAT
TTATACTTGGACAATAACAACTTCATTGGGAGGATTCCTGAAGGATTATACAAACATCCATTTTTGAAGGAGCTGTACAT
TGAAGGAAACCAATTTAGACCAGGAAGCAAATCAAAAGGAACGCACAAGGTGCTTGAATTACCTGATGCTGACATCTTAG
TTTAACAACTGTTTATTCTGTGACGATAGCAGAGCGGCTACCGTTCTACATCTCCTCAGCATGCACCAACAAAAATGTAT
GCATGTTTTTAGGATATATACGATATATGTATCAGTAGTACAGACACTGTTTCTCACAGCACTGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis