Browse Element(s) Details


OsAffx.25053.1.S1_at

Description tigr:9631.m01045
TID=OsAffx.25053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1130011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25053.1.S1_at--1117--3191Chr03:5794375..5794399 (25 bp)
CAATGTATCTGTAAGGAGGCCACTT
LOC_Os03g11300
OsAffx.25053.1.S1_at--707--7991Chr03:5794361..5794385 (25 bp)
GGAGGCCACTTAAACCAGCACAAAG
LOC_Os03g11300
OsAffx.25053.1.S1_at--480--5171Chr03:5794333..5794357 (25 bp)
GCAAGAGGACATAGCTTCAGATCAG
LOC_Os03g11300
OsAffx.25053.1.S1_at--470--10531Chr03:5794318..5794342 (25 bp)
TTCAGATCAGAAGGTGCCACCCAAG
LOC_Os03g11300
OsAffx.25053.1.S1_at--762--7771Chr03:5794306..5794330 (25 bp)
GGTGCCACCCAAGATGGTTGATTCT
LOC_Os03g11300
OsAffx.25053.1.S1_at--423--831Chr03:5794293..5794317 (25 bp)
ATGGTTGATTCTTCTCTGAGCGCGA
LOC_Os03g11300
OsAffx.25053.1.S1_at--447--6671Chr03:5794262..5794286 (25 bp)
GTTCGGGTTCCTCTAGCAAATTGCA
LOC_Os03g11300
OsAffx.25053.1.S1_at--1049--7391Chr03:5794200..5794224 (25 bp)
GTGATTCAGAAGACCCCATCCACCA
LOC_Os03g11300
OsAffx.25053.1.S1_at--663--2951Chr03:5794174..5794198 (25 bp)
AAGGCCAGCAACATCGTATCATTCT
LOC_Os03g11300
OsAffx.25053.1.S1_at--1083--6611Chr03:5794128..5794152 (25 bp)
GTTGGATTAACTGCTGTTGGCCCAG
LOC_Os03g11300
OsAffx.25053.1.S1_at--1038--8371Chr03:5794075..5794099 (25 bp)
GGCGAAGCTCGCTAGCATTACGGAA
LOC_Os03g11300
Target Sequence 
CAATGTATCTGTAAGGAGGCCACTTAAACCAGCACAAAGAAAGCAAGAGGACATAGCTTCAGATCAGAAGGTGCCACCCA
AGATGGTTGATTCTTCTCTGAGCGCGAAGAAAGGTTCGGGTTCCTCTAGCAAATTGCAAGACAAGAAAGGGAGCAAGAAG
TTTGAGCAAGAGCAGGTGATTCAGAAGACCCCATCCACCACAAGGCCAGCAACATCGTATCATTCTAGACGGAATGGAGA
TGGTACTGTTGGATTAACTGCTGTTGGCCCAGCAGACACCAAAACTAATGAATGGGAGAAGGCGAAGCTCGCTAGCATTA
CGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis