Browse Element(s) Details


Os.51567.1.A1_at

Description gb:AK063086.1
DB_XREF= gi:32973104
TID=Os.51567.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-A08, full insert sequence.
FL= gb:AK063086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g112509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51567.1.A1_at--101--2191Chr03:5775474..5775498 (25 bp)
ACACAGCACAGCATGCCGGCGTGGC
LOC_Os03g11250
Os.51567.1.A1_at--819--7831Chr03:5775821..5775845 (25 bp)
GGTACAGCGGCGACTGGTCACGCAT
LOC_Os03g11250
Os.51567.1.A1_at--956--2151Chr03:5775824..5775848 (25 bp)
ACAGCGGCGACTGGTCACGCATCGG
LOC_Os03g11250
Os.51567.1.A1_at--895--7411Chr03:5775922..5775946 (25 bp)
GTGTTCTCGCCATCGTCGGAAGACG
LOC_Os03g11250
Os.51567.1.A1_at--960--9431Chr03:5775937..5775961 (25 bp)
TCGGAAGACGGCAGTAACAACACCT
LOC_Os03g11250
Os.51567.1.A1_at--573--8251Chr03:5775946..5775970 (25 bp)
GGCAGTAACAACACCTGAATCCTAG
LOC_Os03g11250
Os.51567.1.A1_at--375--7011Chr03:5775950..5775974 (25 bp)
GTAACAACACCTGAATCCTAGGAAG
LOC_Os03g11250
Os.51567.1.A1_at--47--1771Chr03:5775958..5775982 (25 bp)
ACCTGAATCCTAGGAAGAAGAGCCA
LOC_Os03g11250
Os.51567.1.A1_at--16--4011Chr03:5776023..5776047 (25 bp)
CGTGTTGTATACTTCGATCGTGATC
LOC_Os03g11250
Os.51567.1.A1_at--1120--7711Chr03:5776073..5776097 (25 bp)
GGGTGTGTTATCAGCAGTGAAAAGC
NONE
Os.51567.1.A1_at--1133--3391Chr03:5776084..5776108 (25 bp)
CAGCAGTGAAAAGCTTTGGCGTGTC
NONE
Target Sequence 
ACACAGCACAGCATGCCGGCGTGGCCCGCCGCCGCCGTCGCCAAGGCCGTCCCGTCCCCGTCCACGCCGCCGCCGCCGCA
CTCGCGCGGAGCAGGCCGCCGTCGCCTCCGCCCGTGCGGCGCAAANANNNNCNNNNNNCCNNNNNNNNNNGNNNNCACNN
CNNNNNNNGNCGGNGTGGTCACCAGGGGCGCCCTCCTGCGGTCCGGCGCCGCTCTCTTCGCGCTCGGCTTCGTCGACGCC
GGGTACAGCGGCGACTGGTCACGCATCGGCGCCATCTCCAAGGACACCGAGGAGGCGCTCAAGCTGGCCGCCTACGCCGT
CGTGCCTCTCTGCCTCGCCGTCGTGTTCTCGCCATCGTCGGAAGACGGCAGTAACAACACCTGAATCCTAGGAAGAAGAG
CCATGCTGCAGATCATNTAGNNGTCGTGATACCATCATGCTTNCGTGTTGTATACTTCGATCGTGATCGCNNCGNNCATT
TCTTTTGCCTAAGGGGTGTGTTATCAGCAGTGAAAAGCTTTGGCGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51567.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis