Browse Element(s) Details


Os.25984.1.S1_at

Description gb:AK070125.1
DB_XREF= gi:32980149
TID=Os.25984.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043P22, full insert sequence.
FL= gb:AK070125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1122011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25984.1.S1_at--42--2751Chr03:5754138..5754162 (25 bp)
AAGAAGCGCTGATTTGTAACTGAAT
LOC_Os03g11220
Os.25984.1.S1_at--842--7051Chr03:5754123..5754147 (25 bp)
GTAACTGAATCTATGATGTCTCATG
LOC_Os03g11220
Os.25984.1.S1_at--884--9471Chr03:5754105..5754129 (25 bp)
TCTCATGAATTGTGAAGGACCTTGC
LOC_Os03g11220
Os.25984.1.S1_at--1039--951Chr03:5754090..5754114 (25 bp)
AGGACCTTGCTGTGTTTGGTTAGTT
LOC_Os03g11220
Os.25984.1.S1_at--981--8751Chr03:5754078..5754102 (25 bp)
TGTTTGGTTAGTTTCCTGTTCTACT
LOC_Os03g11220
Os.25984.1.S1_at--638--9251Chr03:5754065..5754089 (25 bp)
TCCTGTTCTACTTAATGCCCAAATG
LOC_Os03g11220
Os.25984.1.S1_at--717--5591Chr03:5754036..5754060 (25 bp)
GAAATCATGTACGATCTCCATCCGG
LOC_Os03g11220
Os.25984.1.S1_at--812--6411Chr03:5754024..5754048 (25 bp)
GATCTCCATCCGGTTATACAATAAA
LOC_Os03g11220
Os.25984.1.S1_at--1069--8511Chr03:5753910..5753934 (25 bp)
TGGAAACCTGTGTTGCTCATGTTGT
LOC_Os03g11220
Os.25984.1.S1_at--958--10711Chr03:5753898..5753922 (25 bp)
TTGCTCATGTTGTGTGTGCCATTCC
LOC_Os03g11220
Os.25984.1.S1_at--938--7471Chr03:5753887..5753911 (25 bp)
GTGTGTGCCATTCCTGACTATAATT
LOC_Os03g11220
Target Sequence 
AAGAAGCGCTGATTTGTAACTGAATCTATGATGTCTCATGAATTGTGAAGGACCTTGCTGTGTTTGGTTAGTTTCCTGTT
CTACTTAATGCCCAAATGGTGTGAAATCATGTACGATCTCCATCCGGTTATACAATAAAANTGTCTTNGTCNNNNNNNNA
NNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNTGCTACCCATGAATTCGGGGGAATAAATATTGGATGGAAACCTGTG
TTGCTCATGTTGTGTGTGCCATTCCTGACTATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis