Browse Element(s) Details


OsAffx.25051.1.S1_at

Description tigr:9631.m01039
TID=OsAffx.25051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1124011/11Nucleotidyltransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25051.1.S1_at--949--9851Chr03:5761139..5761163 (25 bp)
TACAGGCATGAGACAGGCGCCCAAT
LOC_Os03g11240
OsAffx.25051.1.S1_at--1086--4551Chr03:5761123..5761147 (25 bp)
GCGCCCAATCTTCTGGATCAACAAA
LOC_Os03g11240
OsAffx.25051.1.S1_at--362--2031Chr03:5761099..5761123 (25 bp)
ACTATATACGCAGACCAGGGAACAT
LOC_Os03g11240
OsAffx.25051.1.S1_at--909--4891Chr03:5761049..5761073 (25 bp)
GCTTCAAATGGTATCGGTGCCCTTT
LOC_Os03g11240
OsAffx.25051.1.S1_at--771--931Chr03:5760981..5761005 (25 bp)
AGGCACAAATCACGGTTCTTCATCT
LOC_Os03g11240
OsAffx.25051.1.S1_at--177--5231Chr03:5760947..5760971 (25 bp)
GAATTTGGTTCACTTGGGCCAGTTC
LOC_Os03g11240
OsAffx.25051.1.S1_at--659--6251Chr03:5760914..5760938 (25 bp)
GATGGTGGTGACATGCCACGACCCA
LOC_Os03g11240
OsAffx.25051.1.S1_at--255--9331Chr03:5760888..5760912 (25 bp)
TCGCCAAGCAATGCCCAATGAGTTT
LOC_Os03g11240
OsAffx.25051.1.S1_at--939--411Chr03:5760805..5760828 (24 bp)
ATCATCACCTCAAACTCGCAGGTAG
LOC_Os03g11240
OsAffx.25051.1.S1_at--191--6731Chr03:5759307..5759331 (25 bp)
GTTCTGATCTCCTAATCTGATGGCT
LOC_Os03g11240
OsAffx.25051.1.S1_at--420--851Chr03:5759288..5759312 (25 bp)
ATGGCTGGTCGCATTGAATCCGGTG
LOC_Os03g11240
Target Sequence 
TACAGGCATGAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACACATGGGGATCC
ATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCTCCATATTTCATGTACTACTCATGTGAACCAG
GCACAAATCACGGTTCTTCATCTGAACCACTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATG
CCACGACCCACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGCTCCTCTCATTC
ATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAA
TCCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis