Browse Element(s) Details


Os.19111.1.S1_at

Description gb:AK065966.1
DB_XREF= gi:32975984
TID=Os.19111.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full insert sequence.
FL= gb:AK065966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g112009/11Pre-mRNA processing protein prp39, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11140Os.20190.1.S1_at11/113+5714116..5725348RhoGAP domain containing protein, expressed
LOC_Os03g11150OsAffx.3197.1.S1_at11/113+5726096..5727420hypothetical protein
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19111.1.S1_at--901--3031Chr03:5740843..5740867 (25 bp)
AATCCTCCAGTTTGGCCAGCGACAT
LOC_Os03g11200
Os.19111.1.S1_at--732--5671NONE
GACATCTGAAGCATCGGGCCAACAA
NONE
Os.19111.1.S1_at--144--871Chr03:5740515..5740539 (25 bp)
AGGCCACTTATCCTGCGTATGGAAC
LOC_Os03g11200
Os.19111.1.S1_at--954--8151Chr03:5740495..5740519 (25 bp)
GGAACTTACGACTACAGCCATCAAA
LOC_Os03g11200
Os.19111.1.S1_at--1067--9711NONE
TCAAGCAGCTGCTTACGGTGCCTAT
NONE
Os.19111.1.S1_at--1098--6111Chr03:5740151..5740175 (25 bp)
GAGGGTGCTACGAAAGTCTGTTTAT
LOC_Os03g11200
Os.19111.1.S1_at--1058--6811Chr03:5740132..5740156 (25 bp)
GTTTATTTGTTCTCGCGCTTGTATC
LOC_Os03g11200
Os.19111.1.S1_at--1146--4911Chr03:5740116..5740140 (25 bp)
GCTTGTATCGCTGCAGCCTAAATTA
LOC_Os03g11200
Os.19111.1.S1_at--822--8251Chr03:5740055..5740079 (25 bp)
GGCAGGACCCTTTGTATTAGTACTA
LOC_Os03g11200
Os.19111.1.S1_at--986--3511Chr03:5740002..5740026 (25 bp)
CATGATTTGTATAGCACCTCGTGAC
LOC_Os03g11200
Os.19111.1.S1_at--367--3991Chr03:5739983..5740007 (25 bp)
CGTGACATTTTCCTGCTAGCATAAT
LOC_Os03g11200
Target Sequence 
AATCCTCCAGTTTGGCCAGCGACATCTGAAGCATCGGGCCAACAATGGGGAGCTGCTTATGCACCACAGGCCACTTATCC
TGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAATCTGCTCCTCAAGCAGCTGCTTACGGTGCCTATCCTCCAA
CATACCCCGCTCAGGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCACCAGCACCCGCAGTG
GCACCGGCGGCAGCTTACCCTCAGCAACCTGTTGCAGCTCAGCAACCATATTATGGAACAGGAACATACTACTGATCTGT
AGACTGATTCAAGAGGGTGCTACGAAAGTCTGTTTATTTGTTCTCGCGCTTGTATCGCTGCAGCCTAAATTAGCATATTT
TACTGATGATACTGTAGGTCGAAGCCATGGCAGGACCCTTTGTATTAGTACTACTAGCGTTACCNGAAGACTAGTTAAGC
ACATGATTTGTATAGCACCTCGTGACATTTTCCTGCTAGCATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis