Browse Element(s) Details


Os.53716.1.S1_at

Description gb:AK099456.1
DB_XREF= gi:32984665
TID=Os.53716.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022M22, full insert sequence.
FL= gb:AK099456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1123011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53716.1.S1_at--280--2051Chr03:5757849..5757873 (25 bp)
ACTTTCTCTTAATTTGGTGCTCTCA
LOC_Os03g11230
Os.53716.1.S1_at--801--2731Chr03:5757887..5757911 (25 bp)
AAGAAGTACGCCGAGTTCGACTCCA
LOC_Os03g11230
Os.53716.1.S1_at--422--10511Chr03:5757914..5757938 (25 bp)
TTCAAGTCTTCCCAAGTGCTCAAGG
LOC_Os03g11230
Os.53716.1.S1_at--501--552Chr03:5757967..5757991 (25 bp)
ACTGAAGTACCCCAATTTTCGCTAG
LOC_Os03g11230
Os.53716.1.S1_at--673--10631Chr03:5757984..5758008 (25 bp)
TTCGCTAGCCCTGTTTCTCTTGAAG
LOC_Os03g11230
Os.53716.1.S1_at--1100--10551Chr03:5758025..5758049 (25 bp)
TTCTTGCCATGGGTCTCTGAACAAT
LOC_Os03g11230
Os.53716.1.S1_at--200--351Chr03:5758087..5758111 (25 bp)
ATAAATACTGCCTGCGTGGCGCCGA
LOC_Os03g11230
Os.53716.1.S1_at--917--7431Chr03:5758211..5758235 (25 bp)
GTGTAGACCATTTTCCACCATGGTG
LOC_Os03g11230
Os.53716.1.S1_at--337--2131Chr03:5758257..5758281 (25 bp)
ACAGCTTTTGTTGCCAGACCAGTAC
LOC_Os03g11230
Os.53716.1.S1_at--597--6911Chr03:5758278..5758302 (25 bp)
GTACCACCACTATGTTTAGATCCAG
LOC_Os03g11230
Os.53716.1.S1_at--591--4951Chr03:5758308..5758332 (25 bp)
GCATTTTACTCTTGGTAGCCTGATT
LOC_Os03g11230
Target Sequence 
ACTTTCTCTTAATTTGGTGCTCTCAAGCGGAGAACCAGAAGAAGTACGCCGAGTTCGACTCCAGGTTCAAGTCTTCCCAA
GTGCTCAAGGATCTGCTCGAGAAGTCCAAGCAGAACAAACTGAAGTACCCCAATTTTCGCTAGCCCTGTTTCTCTTGAAG
CTCTCCTGCAGCCATGTTCTTGCCATGGGTCTCTGAACAATTTATCAAAAAATTGCAGGAATGAGAGGGAGATTCAGGAT
AAATACTGCCTGCGTGGCGCCGAGTGGGGCGTCGGGGACTGCTCGACGGAGGGGATGTCGGACCAGGAGAAGGAGGATTT
CATCGCAGAGCTGAAGAAAAGAACTGGACAAGAGTGAAAAATGTGTAGACCATTTTCCACCATGGTGGAGTTTTGCCACT
GCATATATACAGCTTTTGTTGCCAGACCAGTACCACCACTATGTTTAGATCCAGGAATGGCATTTTACTCTTGGTAGCCT
GATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis