Browse Element(s) Details


OsAffx.12823.1.S1_s_at

Description tigr:9631.m01037
TID=OsAffx.12823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1122011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11160OsAffx.3198.1.S1_at11/113+5729069..5729413expressed protein
LOC_Os03g11170NANA3+5732398..5732751Cystatin, putative
LOC_Os03g11180Os.57206.1.S1_at10/113+5734469..5735028Cystatin, putative, expressed
LOC_Os03g11190OsAffx.3199.1.S1_at11/113+5737209..5738515expressed protein
LOC_Os03g11200Os.19111.1.S1_at9/113+5739963..5746555Pre-mRNA processing protein prp39, putative, expressed
LOC_Os03g11210Os.9875.1.S1_at8/113+5749205..5751366cp protein, putative
LOC_Os03g11220OsAffx.12823.1.S1_s_at11/113+5753850..5755369expressed protein
LOC_Os03g11220Os.25984.1.S1_at11/113+5753850..5755369expressed protein
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12823.1.S1_s_at--1110--1271Chr03:5754619..5754643 (25 bp)
AGATGATTACATGAAGAAGCCGAGT
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--1070--1431Chr03:5754545..5754569 (25 bp)
AGAAGAAGCCTGGTGGTGGTCATGG
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--1103--8591Chr03:5754460..5754484 (25 bp)
TGGTGCTTCAAGTGGTGGAGGCCAT
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--419--1451Chr03:5754407..5754431 (25 bp)
AGAAGAAGCCTAGCGCGCACTCCGG
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--1114--2871Chr03:5754353..5754377 (25 bp)
AAGGGTACAAGAAGCCTAGTGGCCA
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--698--7031Chr03:5754349..5754373 (25 bp)
GTACAAGAAGCCTAGTGGCCATGGG
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--941--8351Chr03:5754255..5754279 (25 bp)
GGCGGCATGGGAGACTACCTGAAAC
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--170--7651Chr03:5754247..5754271 (25 bp)
GGGAGACTACCTGAAACTGGCACAA
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--316--2391Chr03:5754234..5754258 (25 bp)
AAACTGGCACAAGGTCTCATGAAGA
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--481--5131Chr03:5754228..5754252 (25 bp)
GCACAAGGTCTCATGAAGAAGCAAG
LOC_Os03g11220
OsAffx.12823.1.S1_s_at--259--4691Chr03:5754182..5754206 (25 bp)
GCGGCGGTATGGGTGACTACTTAAA
LOC_Os03g11220
Target Sequence 
AGATGATTACATGAAGAAGCCGAGTGCCGGTGCGGGTGGATATGGAGGTGGTGGAAGGTATGAGGATGAGTACAAGAAGA
AGCCTGGTGGTGGTCATGGTGGAGGGAGGTATGAGGAGGATGATGAGTACAACAAGAAGCCTAGTGGTGGATATGGGTAT
GGTGCTTCAAGTGGTGGAGGCCATGGTGGGAGGTATGAAGAAGATGACTACAAGAAGAAGCCTAGCGCGCACTCCGGTGG
CGGCGGTGGCAGGTATGAGGAAGAGGAAGGGTACAAGAAGCCTAGTGGCCATGGGGGAGGGAGGTATGGTAAGGAGGAAG
AGGAAGATGACAAGAAGAAAAAGAAGCATGGCGAGGGGTCGGAGGGCGGCATGGGAGACTACCTGAAACTGGCACAAGGT
CTCATGAAGAAGCAAGGCGGTGAGGGGGAGAGCGGTGGCGGCGGTATGGGTGACTACTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12823.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis