Browse Element(s) Details


Os.24634.1.A1_s_at

Description gb:CA762261
DB_XREF= gi:25806300
DB_XREF=BR060007A20B01.ab1
CLONE=BR060007A20B01.ab1
TID=Os.24634.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24634 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_189575.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1131011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24634.1.A1_s_at--741--3231Chr03:5799570..5799594 (25 bp)
CAACACGGTAATTCACGGGCTTTGT
LOC_Os03g11310
Os.24634.1.A1_s_at--11--9151Chr03:5799596..5799620 (25 bp)
TGCGAGGCAAGATCAGATTAGCGAG
LOC_Os03g11310
Os.24634.1.A1_s_at--1003--6871Chr03:5799625..5799649 (25 bp)
GTATACACGAAAATGCGGAGCATTG
LOC_Os03g11310
Os.24634.1.A1_s_at--1153--2351Chr03:5799655..5799679 (25 bp)
AAACCAGATGGCAAGACCAGGTCGT
LOC_Os03g11310
Os.24634.1.A1_s_at--539--5851Chr03:5799669..5799693 (25 bp)
GACCAGGTCGTTCATGCTGCAGAAT
LOC_Os03g11310
Os.24634.1.A1_s_at--356--771Chr03:5799719..5799743 (25 bp)
ATGTCCCTGAGAAAACACTAGTTTG
LOC_Os03g11310
Os.24634.1.A1_s_at--460--2031Chr03:5799735..5799759 (25 bp)
ACTAGTTTGTAGTTCAGTCAGTAGC
LOC_Os03g11310
Os.24634.1.A1_s_at--340--8751Chr03:5799760..5799784 (25 bp)
TGTACAGATCCAAACGAAGCATCAC
LOC_Os03g11310
Os.24634.1.A1_s_at--706--3691Chr03:5799789..5799813 (25 bp)
CTATATGTAACCTGCTGTCACTATT
LOC_Os03g11310
Os.24634.1.A1_s_at--411--9011Chr03:5799815..5799839 (25 bp)
TGAATCAAGCAGTTCTCATTTTAGC
LOC_Os03g11310
Os.24634.1.A1_s_at--982--1511Chr03:5799822..5799846 (25 bp)
AGCAGTTCTCATTTTAGCTGTTGCC
LOC_Os03g11310
Target Sequence 
CAACACGGTAATTCACGGGCTTTGTNTGCGAGGCAAGATCAGATTAGCGAGGAAGGTATACACGAAAATGCGGAGCATTG
GGCTGAAACCAGATGGCAAGACCAGGTCGTTCATGCTGCAGAATTTAGCCNCTGACTACTAGCAGTATAATGTCCCTGAG
AAAACACTAGTTTGTAGTTCAGTCAGTAGCTGTACAGATCCAAACGAAGCATCACNCCNCTATATGTAACCTGCTGTCAC
TATTNTGAATCAAGCAGTTCTCATTTTAGCTGTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24634.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis