Browse Element(s) Details

OsAffx.2198.4.S1_at

Description

tigr:9631.m01050
TID=OsAffx.2198.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=anthocyanin 3-glucosyltransferase
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g11350	11/11	Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g11320	Os.5477.1.S2_at	11/11	3	+	5802770..5807225	Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320	Os.5477.1.S1_at	11/11	3	+	5802770..5807225	Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330	OsAffx.12825.1.S1_s_at	11/11	3	+	5808129..5813883	Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340	Os.12674.1.S1_s_at	11/11	3	+	5819824..5823946	leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340	Os.50482.1.S1_at	11/11	3	+	5819824..5823946	leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350	OsAffx.2198.4.S1_at	11/11	3	+	5828014..5829498	Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360	Os.16437.1.S1_at	11/11	3	+	5831689..5836578	Leucine Rich Repeat family protein, expressed
LOC_Os03g11370	Os.7036.1.S1_at	11/11	3	+	5837342..5839072	B3 DNA binding domain containing protein, expressed
LOC_Os03g11380	OsAffx.25055.1.S1_s_at	11/11	3	+	5839832..5843006	SNARE domain containing protein, expressed
LOC_Os03g11380	OsAffx.25055.1.S1_at	11/11	3	+	5839832..5843006	SNARE domain containing protein, expressed
LOC_Os03g11380	Os.51936.1.S1_at	11/11	3	+	5839832..5843006	SNARE domain containing protein, expressed
LOC_Os03g11390	OsAffx.25056.1.S1_at	10/11	3	+	5843172..5843815	hypothetical protein
LOC_Os03g11400	OsAffx.3200.1.S1_s_at	11/11	3	+	5844753..5848379	Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400	Os.51997.1.S1_at	11/11	3	+	5844753..5848379	Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400	OsAffx.3200.1.S1_at	11/11	3	+	5844753..5848379	Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410	Os.10891.1.S1_at	2/11	3	+	5849271..5853928	Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008194	molecular_function	UDP-glycosyltransferase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.2198.4.S1_at--305--477	1	Chr03:5829003..5829027 (25 bp)	GCTGCTCCCGGACGTCGTGCACGCC	LOC_Os03g11350
OsAffx.2198.4.S1_at--1015--397	1	Chr03:5829179..5829203 (25 bp)	CGGTGTTCGCGGAGCAGTTCTACAA	LOC_Os03g11350
OsAffx.2198.4.S1_at--354--775	1	Chr03:5829180..5829204 (25 bp)	GGTGTTCGCGGAGCAGTTCTACAAC	LOC_Os03g11350
OsAffx.2198.4.S1_at--1112--741	1	Chr03:5829181..5829205 (25 bp)	GTGTTCGCGGAGCAGTTCTACAACG	LOC_Os03g11350
OsAffx.2198.4.S1_at--135--671	1	Chr03:5829183..5829207 (25 bp)	GTTCGCGGAGCAGTTCTACAACGAG	LOC_Os03g11350
OsAffx.2198.4.S1_at--664--933	1	Chr03:5829185..5829209 (25 bp)	TCGCGGAGCAGTTCTACAACGAGGC	LOC_Os03g11350
OsAffx.2198.4.S1_at--843--395	1	Chr03:5829188..5829212 (25 bp)	CGGAGCAGTTCTACAACGAGGCGCT	LOC_Os03g11350
OsAffx.2198.4.S1_at--868--593	1	Chr03:5829190..5829214 (25 bp)	GAGCAGTTCTACAACGAGGCGCTGG	LOC_Os03g11350
OsAffx.2198.4.S1_at--302--153	1	Chr03:5829191..5829215 (25 bp)	AGCAGTTCTACAACGAGGCGCTGGT	LOC_Os03g11350
OsAffx.2198.4.S1_at--204--123	1	Chr03:5829194..5829218 (25 bp)	AGTTCTACAACGAGGCGCTGGTGGT	LOC_Os03g11350
OsAffx.2198.4.S1_at--196--673	1	Chr03:5829195..5829219 (25 bp)	GTTCTACAACGAGGCGCTGGTGGTC	LOC_Os03g11350

Target Sequence

GCTGCTCCCGGACGTCGTGCACGCCGCCGTGTCGTCCGGCCGCGGCCACGTGATCGCGGGGTGGGCGCCGCAGGTGGCGG
TGCTGAGGCACGCGGCGGTGGGCGCGTTCGTGACGCACTGCGGGTGGGGCGCGGTGACGGAGGCGGCGGCGGCCGGGGTG
CCGGTGCTGGCGTGGCCGGTGTTCGCGGAGCAGTTCTACAACGAGGCGCTGGTGGTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis