Browse Element(s) Details


Os.7036.1.S1_at

Description gb:AK070861.1
DB_XREF= gi:32980884
TID=Os.7036.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073O05, full insert sequence.
FL= gb:AK070861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1137011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7036.1.S1_at--898--3351Chr03:5838699..5838723 (25 bp)
CACCCTCGAGTGATCGATCTTACTA
LOC_Os03g11370
Os.7036.1.S1_at--1004--10471Chr03:5838746..5838770 (25 bp)
TTAATTAGCGCGCTCTCGTAGTCTC
LOC_Os03g11370
Os.7036.1.S1_at--119--10451Chr03:5838804..5838828 (25 bp)
TTAGTCGTTCTAAATGGCCCGTATT
LOC_Os03g11370
Os.7036.1.S1_at--754--2271Chr03:5838840..5838864 (25 bp)
AAATCGTCTGGTACTTGATCGGATG
LOC_Os03g11370
Os.7036.1.S1_at--22--8711Chr03:5838876..5838900 (25 bp)
TGTGCCACTGGCAGATCGACAGGTG
LOC_Os03g11370
Os.7036.1.S1_at--826--7531Chr03:5838898..5838922 (25 bp)
GTGGCCGAGCTGTGTACCGAACTGC
LOC_Os03g11370
Os.7036.1.S1_at--482--1791Chr03:5838913..5838937 (25 bp)
ACCGAACTGCTTTATTACTCTCTTT
LOC_Os03g11370
Os.7036.1.S1_at--496--2451Chr03:5838942..5838966 (25 bp)
AACAAGGCCCTGTGTTTCGCATTCA
LOC_Os03g11370
Os.7036.1.S1_at--1147--8151Chr03:5838975..5838999 (25 bp)
GGAAACAACCCAATCTCGTCATAAG
LOC_Os03g11370
Os.7036.1.S1_at--277--831Chr03:5839005..5839029 (25 bp)
ATGGATTCGTATCGCAAGTGCTCCC
LOC_Os03g11370
Os.7036.1.S1_at--110--2871Chr03:5839020..5839044 (25 bp)
AAGTGCTCCCTCAGTGTTAATGTAA
LOC_Os03g11370
Target Sequence 
CACCCTCGAGTGATCGATCTTACTAATTAACTACTGAGATTAATAAATTAATTAGCGCGCTCTCGTAGTCTCGTCTCGTC
GTGTGTGTGTGTGTTTAGGTGTTGGTTAGTCGTTCTAAATGGCCCGTATTTGTCTTACGTTAAATCGTCTGGTACTTGAT
CGGATGGTGTTTGTGGGTGTGCCACTGGCAGATCGACAGGTGGCCGAGCTGTGTACCGAACTGCTTTATTACTCTCTTTC
ACGAACAAGGCCCTGTGTTTCGCATTCACAACAATGGGAAACAACCCAATCTCGTCATAAGACTGGATGGATTCGTATCG
CAAGTGCTCCCTCAGTGTTAATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis