Browse Element(s) Details


OsAffx.3291.1.S1_at

Description tigr:9631.m02187
TID=OsAffx.3291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2187011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3291.1.S1_at--197--3532Chr10:12811811..12811834 (23 bp)
CATGCATGGTGATCGATCATGGCGT
NONE
OsAffx.3291.1.S1_at--875--9052Chr10:12811809..12811834 (25 bp)
TGCATGGTGATCGATCATGGCGTGC
NONE
OsAffx.3291.1.S1_at--721--9631Chr03:12488514..12488538 (25 bp)
TCATGGCGTGCTCAATTGATCAATT
LOC_Os03g21870
OsAffx.3291.1.S1_at--682--3491Chr03:12488513..12488537 (25 bp)
CATGGCGTGCTCAATTGATCAATTC
LOC_Os03g21870
OsAffx.3291.1.S1_at--1094--8471Chr03:12488511..12488535 (25 bp)
TGGCGTGCTCAATTGATCAATTCTT
LOC_Os03g21870
OsAffx.3291.1.S1_at--30--8371Chr03:12488510..12488534 (25 bp)
GGCGTGCTCAATTGATCAATTCTTC
LOC_Os03g21870
OsAffx.3291.1.S1_at--1157--4651Chr03:12488509..12488533 (25 bp)
GCGTGCTCAATTGATCAATTCTTCA
LOC_Os03g21870
OsAffx.3291.1.S1_at--1158--7311Chr03:12488507..12488531 (25 bp)
GTGCTCAATTGATCAATTCTTCATG
LOC_Os03g21870
OsAffx.3291.1.S1_at--891--3651Chr03:12488489..12488513 (25 bp)
CTTCATGGTTACTTCCATCCGAGTG
LOC_Os03g21870
OsAffx.3291.1.S1_at--301--831Chr03:12488485..12488509 (25 bp)
ATGGTTACTTCCATCCGAGTGATGA
LOC_Os03g21870
OsAffx.3291.1.S1_at--735--10471Chr03:12488481..12488505 (25 bp)
TTACTTCCATCCGAGTGATGACTGA
LOC_Os03g21870
Target Sequence 
CATGCATGGTGATCGATCATGGCGTGCTCAATTGATCAATTCTTCATGGTTACTTCCATCCGAGTGATGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis